Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01858 ATGGATTCCCCAATTTCCTCATTCCTTCTTTTATTTGCCTTTTCCCTTCCCTTCGTCTTTGGAAACCCCTTAGATTTATACAGCTCCTGCAGCAACCTCTTCAACTGCGGCAATATCACCAACGTCGGCTTCCCCTTCTGGGGCGTCGGAAGGCCTCCCGACTGCGGCTATCCGGCACTCCAATTGGCCTGCGAAGGTAGTAATACGACGATCGTTATTATGGAAATTAAATATCAGATTCTCAAATACAGCTTCCAAAATAACTTCCAAACGCTCACCATCGCCAGAACCGATTATATGGGTACGCTCTGCCCTAAGAAATTCATCAACACCACAATCGATTACAATCTCTTCAATGAAATTCCTACTTATCGCAATATTACTTTGCTCTACTGCTCCTCTTCTACCGTCGCCGGGCAATTTAGCTGTCCTGGATATAACGCCGGCTTCATTCAGGTGAGCCCCATGGAATTTATTCCCTGCAATGTGAACGTGATCGTGCCGGTTTCTATGAATTTCTTCCCGCCGGTGAGCGATGTTGTGAACTCAACTGAGGTATTGAAGGCCTTTAACGAGGGATTTGAGGTGAGATTGAAGGAGGACGGCGGTAGATGTAGAATTTGTGAGCAGTCGCAGGGGGTTTGCGGCTACGATTTGAGTTCGAATCGGACGACTTGCTATTGTCGAGTGGGCGATTCTATTGACAACGGAGCTTGTAGGAATCTTCAGGCCGGTGGAGCTCCGTCATCTCCTCCGGGTGAGAATCGATCTAATAAAACAAGCCTGATAGTAGGCCTTTCTATTGGAGGGGCAACTGTATTAGGCCTATGCTTAGGATGCTTTGTTTTCTGCACTACACAACGCAATAAAAAACGTGTTATGAAGTTGAAAAGCAAAGATCTTCCTTCACCTCCTTCAAGTGGAGGCATTCCGACTCCCTCAACTTTTCGCTCTAGTAGTATTCCTTCCTATCCTTATTCAAGATCTAATATAGAGAACGGAAGCTCTTACTTTGGAGCTCAAGTCTTTACTTATGCCGAACTTGAGGAAGCAACTCATAATTTTGACCGTTCAAGAGAGCTTGGAGATGGAGGTTATGGTACTGTCTACTTTGGAACTCTCAAGGATGGAAGGACAGTCGCAGTAAAGCGGCTATACGAGAATAATTACAAACGTGTTCAGCAGTTCACAAATGAAGTTGAGATTCTCTCAAAATTGCAACATCCTAATCTCGTGAAGCTTTACGGATGCACATCGAGACAAAGCCAGGGACTCCTCCTTGTATACGAGTACATTTCTAATGGAACAGTGGCTGACCATCTTCATGGAAAACAAGCAAATTCAGGTCTCCTCACTTGGTCTGTTAGGCTCAAGATTGCCATAGAAACAGCTAATGCACTGGCATACCTCCATCGAAAAGATATCATTCATCGCGATGTCAAAACCAATAACATTCTTCTAGACAACAACTTCAAAGTAAAAGTGGCTGATTTCGGCCTCTCACGGTTATTTCCCATCAACGTTACTCACGTTTCAACTGCTCCACAAGGAACACCAGGCTATGTTGATCCTGAGTACTATCAGTGCTACCAACTTACCGACAAGAGCGATGTTTATAGCTTTGGAGTGGTTTTGGTCGAGCTTATATCGTCACTGCAGGCAGTTGACGTCAACAGGAACAGAGACGATATCAATTTGTCTAATATGGCTATCAATAGAATTCACAATCAAGCATTGGCTGATTTAGTTGATCCAGATCTTGGGTTTGAGAGGGATTATGCAGTAAGGTCGATGATAAAGTCAGTGGCCGAGTTGGCTTATCGATGTCTTCAACAAACGAGAGATGCGCGACCTTCAATGGATGAAGTGGTGGAAGCTCTTAGAGAATTAGAGAATGAAGAAGTGGCTGCTCGTAAAGCAGAAGTGCTAGTAGATTTAGGTTCTGATAATGTGAGGCTTTTAAGAAATACATCATCTCCGCAATCACCAGAATCTGGACCAGTGACAGATAAATGGATGAAGGTCTTGAACAGAACAACTTAA 2043 44.15 MDSPISSFLLLFAFSLPFVFGNPLDLYSSCSNLFNCGNITNVGFPFWGVGRPPDCGYPALQLACEGSNTTIVIMEIKYQILKYSFQNNFQTLTIARTDYMGTLCPKKFINTTIDYNLFNEIPTYRNITLLYCSSSTVAGQFSCPGYNAGFIQVSPMEFIPCNVNVIVPVSMNFFPPVSDVVNSTEVLKAFNEGFEVRLKEDGGRCRICEQSQGVCGYDLSSNRTTCYCRVGDSIDNGACRNLQAGGAPSSPPGENRSNKTSLIVGLSIGGATVLGLCLGCFVFCTTQRNKKRVMKLKSKDLPSPPSSGGIPTPSTFRSSSIPSYPYSRSNIENGSSYFGAQVFTYAELEEATHNFDRSRELGDGGYGTVYFGTLKDGRTVAVKRLYENNYKRVQQFTNEVEILSKLQHPNLVKLYGCTSRQSQGLLLVYEYISNGTVADHLHGKQANSGLLTWSVRLKIAIETANALAYLHRKDIIHRDVKTNNILLDNNFKVKVADFGLSRLFPINVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLQAVDVNRNRDDINLSNMAINRIHNQALADLVDPDLGFERDYAVRSMIKSVAELAYRCLQQTRDARPSMDEVVEALRELENEEVAARKAEVLVDLGSDNVRLLRNTSSPQSPESGPVTDKWMKVLNRTT* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18320320 18327626 - CsaV3_4G028840.1 Csa04g01858 527468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01858 680 CDD STKc_IRAK 361 630 - -
Csa04g01858 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Csa04g01858 680 Gene3D Transferase(Phosphotransferase) domain 1 432 644 - -
Csa04g01858 680 Pfam Wall-associated receptor kinase galacturonan-binding 30 95 IPR025287 GO:0030247
Csa04g01858 680 Pfam Protein kinase domain 356 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01858 680 Gene3D Phosphorylase Kinase; domain 1 328 431 - -
Csa04g01858 680 Coils Coil 620 643 - -
Csa04g01858 680 SUPERFAMILY Protein kinase-like (PK-like) 341 635 IPR011009 -
Csa04g01858 680 ProSiteProfiles Protein kinase domain profile. 355 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01858 680 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 9 661 IPR044652 -
Csa04g01858 680 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Csa04g01858 680 Pfam Wall-associated receptor kinase C-terminal 161 229 IPR032872 -
Csa04g01858 680 SMART serkin_6 355 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01858 680 PANTHER - 9 661 - -
Csa04g01858 680 MobiDBLite consensus disorder prediction 295 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00398 Csa-Chr1:2483778 Csa04g01858 Csa-Chr4:18320320 5.23E-175 dispersed
Csa01g00687 Csa-Chr1:4371182 Csa04g01858 Csa-Chr4:18320320 2.38E-131 dispersed
Csa02g02013 Csa-Chr2:18662993 Csa04g01858 Csa-Chr4:18320320 1.21E-95 dispersed
Csa02g02560 Csa-Chr2:22403360 Csa04g01858 Csa-Chr4:18320320 0 dispersed
Csa04g01858 Csa-Chr4:18320320 Csa05g02634 Csa-Chr5:27440239 7.46E-151 dispersed
Csa04g01858 Csa-Chr4:18320320 Csa04g01859 Csa-Chr4:18331559 1.34E-41 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78172 PF00069 Pkinase 7.10E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01858 - - mcha:111016973 996.497