Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01860 ATGGAACACCCACCCATCTCTTCTCTCTTCTTCCATGGATTCCCCAATTTCCTCATTCCTTCTTTTCTTTGCCTTTTCCCTTCCCTTCGTCTTTGGAACTTCCTTAGATTTATACAGCTCCTGCAGGCAACCTCTTCAACTGCGGCGATATCACCAACTTGCTATTGTCGAGTGGGCGATTCTATTGACAACGGAGCTTGTAGGAATCTTCAGGCCGGTGGAGCTCCGTCATCTCCTCCGGGAGATCGAGATGGAAATCGAAACTTGAAGGTTGTCATTGGTGAAGGTGGATATGGCATTGTCTATCAAGGCAAACTTCTTGATGGTACTCTTGTAGCCATAAAAGTTTTAAAGTTATCGAAAGCCAATGGTGAAGATTTCATAAATGAAGTTATGAGTATTAGTAGAACTTCACATGTCAATATAGTTGGTCTTTTAGGGTTCTGTTATACCTCAAGGAAAGCAGCTCTAATTTATGAATTTATGGCCAATGGATCACTTGATAGATTCATGTCAAGAAGTCACAATCATGAGATGAAAATGCTTCATAGAATTGTGACAGGTGTGGCAAGAGGATTAGAGTATTTACATTGTGGTTGTAGTACAAGGATAGTGCATTTTGATATAAAGCCACAAAACATTCTCTTGGATGAAGATTCAAACCCTAAAATCTCTGATTTTGGCCTTGCAAAGCTTTGCAAAAGAAAAGTGAGTGCAATTTCAATGTTAGGAACTCGAGGAACAGCTGGATTTATCGCACCAGAAGTTTTTAGTCCTGCATTTGGAATCGTGTCGTACAAATCTGATGTGTATAGTTATGGGATGTTAGTTCTTGATCTTGTATTGGGAGGAATAAGAAATAATCCTAACCGTTCAAGATTGTTATCCGATGATGATAGTGAAATGTACTTTCCAAATTGGGTATTCAAGAATATTGAAATGAGTAAGAGTATAAGAATGAGACAAAGTTTGATGGAGGAAGAAGAAGAAGAAATGGAAAAGAAAATGACTATGATAGGTTTATGGTGCATTCAAACATCTCCCATAGATAGGCCTACAATGAGTAGAGTTTTGGAGATGTTAGAAGGCAGCATTCACTCCTTGCAAATGCCTCCAAGACCTTTATTGGTTGCTCCTAATATGGCAACCCAACAATCTACTTCTGAATCGCTATCATATATATGA 1185 38.82 MEHPPISSLFFHGFPNFLIPSFLCLFPSLRLWNFLRFIQLLQATSSTAAISPTCYCRVGDSIDNGACRNLQAGGAPSSPPGDRDGNRNLKVVIGEGGYGIVYQGKLLDGTLVAIKVLKLSKANGEDFINEVMSISRTSHVNIVGLLGFCYTSRKAALIYEFMANGSLDRFMSRSHNHEMKMLHRIVTGVARGLEYLHCGCSTRIVHFDIKPQNILLDEDSNPKISDFGLAKLCKRKVSAISMLGTRGTAGFIAPEVFSPAFGIVSYKSDVYSYGMLVLDLVLGGIRNNPNRSRLLSDDDSEMYFPNWVFKNIEMSKSIRMRQSLMEEEEEEMEKKMTMIGLWCIQTSPIDRPTMSRVLEMLEGSIHSLQMPPRPLLVAPNMATQQSTSESLSYI* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18336690 18341115 - CsaV3_4G028860.1 Csa04g01860 527470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01860 394 ProSiteProfiles Protein kinase domain profile. 87 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01860 394 Gene3D Transferase(Phosphotransferase) domain 1 163 370 - -
Csa04g01860 394 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Csa04g01860 394 Gene3D Phosphorylase Kinase; domain 1 93 162 - -
Csa04g01860 394 SUPERFAMILY Protein kinase-like (PK-like) 88 362 IPR011009 -
Csa04g01860 394 Pfam Protein kinase domain 90 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01860 394 PANTHER - 91 388 - -
Csa04g01860 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Csa04g01860 394 PANTHER RUST RESISTANCE KINASE LR10-RELATED 91 388 IPR045874 GO:0004672
Csa04g01860 394 SMART serkin_6 87 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01860 Csa-Chr4:18336690 Csa05g02636 Csa-Chr5:27446431 4.05E-106 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78173 PF00069 Pkinase 1.50E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01860 - - csv:101205701 592.808