Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01861 | ATGGGCTTAGCCATGGTGATTGTTGGTCTGTTTTTACTCCTCTGTTTTTGCGCTGCTTTACTCCGACGGAATGAAGTTCGATACATAAAAAATGGATTGCCTCCTGGTACAATGGGTTGGCCTGTTTTTGGTGAAACCTCTGAGTTTCTTAAACAAGGTCCGAATTTTATGAATTCTAAAAGAGCAAGGTATGGGAGCTTTTTCAAATCACATATTTTGGGATCTCCTACGGTTGTTTCTATGGATCCAGAGGTTAATAGATATATTTTAATGAATGAATCTAAAGGACTCGTCGCTGGTTATCCTCAATCTATGCTTGATATACTTGGAAAATGCAATATCGCTGCCGTACACGGCGACGCTCATAAGCTTATGAGAGGTGCTCTACTTGCTATTGTTAGTCCCACCATGATTAAAGATCGTCTTCTTCTTCAAGTTGATGAGTTTATGAGATCCCATTTGCGTAATTGGGATAGCCAAATCATTGATATTCAAGAAAAAACTAAACAGATGGCTTTCTGGACATCTTTGAAGCAGACTACCAGTATCGAATCCGGTCCATTATGGGAATCTTTCACCATAGAATTCTTTAAGCTCGTCCTGGGCACTTTCTCGCTCCCAATCGATCTTCCAGGCACGAATTACCGTATAGGAGTTCAGGCAAGGAATAACATAGTAAAGCTATTGAGGCAGCTGATTAATGAGAGAGGAAATTCAAAGATTCAAAAAGATGACATGCTTGGATATTTATTGAGTGAAGAGAACAAATATAAACTAAATGAGGAACAGATTATTGATCAAGTCATTACTGTTTTCTATTCTGGTTATGAAACTGTTTCAACAACTTCAATGATGGCTGTAAAGTTCCTTCATGATCATCCCAAAGTTCTTCAGCAACTCAGAGAAGAACATTTAGCATTAAGAGAGAAGAAAAATCCCAAGGACCCGATCGATTGGGATGATTTTAAAGCAATGGAGTTCACTCGTGCGGTAATTTTTGAAACATCAAGGCTAGCTACTGTTGTTAATGGAGTTTTGAGGAAAACTACAAAGGATTTGGAAGTAAATGGGTTTCTAATTCCCAAGGGATGGAGGATTTATGACAAAAGCTTAGAGTCCCATAATTATTTTTTCCTCTTTGGCGGTGGAATTAGGCTTTGTCCTGGCAAAGAATTGGGAATTGCAGAGGTTTCTACATTTTTACATTACTTTGTAACTAAATACAGGTGGGAAGAAGTTGGAGAATGTAAGCTCTTGAAATTTCCAAGAGTTAAAGCTCGGAATGGGTTTCACATTAGGGTTTCATCCTACTGA | 1314 | 38.43 | MGLAMVIVGLFLLLCFCAALLRRNEVRYIKNGLPPGTMGWPVFGETSEFLKQGPNFMNSKRARYGSFFKSHILGSPTVVSMDPEVNRYILMNESKGLVAGYPQSMLDILGKCNIAAVHGDAHKLMRGALLAIVSPTMIKDRLLLQVDEFMRSHLRNWDSQIIDIQEKTKQMAFWTSLKQTTSIESGPLWESFTIEFFKLVLGTFSLPIDLPGTNYRIGVQARNNIVKLLRQLINERGNSKIQKDDMLGYLLSEENKYKLNEEQIIDQVITVFYSGYETVSTTSMMAVKFLHDHPKVLQQLREEHLALREKKNPKDPIDWDDFKAMEFTRAVIFETSRLATVVNGVLRKTTKDLEVNGFLIPKGWRIYDKSLESHNYFFLFGGGIRLCPGKELGIAEVSTFLHYFVTKYRWEEVGECKLLKFPRVKARNGFHIRVSSY* | 438 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18349295 | 18351918 | + | CsaV3_4G028870.1 | Csa04g01861 | 527471 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01861 | 437 | PRINTS | E-class P450 group IV signature | 55 | 78 | IPR002403 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | PRINTS | E-class P450 group IV signature | 371 | 387 | IPR002403 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | PRINTS | E-class P450 group IV signature | 387 | 405 | IPR002403 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | SUPERFAMILY | Cytochrome P450 | 27 | 434 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | Pfam | Cytochrome P450 | 34 | 366 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 380 | 389 | IPR017972 | GO:0005506|GO:0016705 | |
Csa04g01861 | 437 | Gene3D | Cytochrome P450 | 24 | 436 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | PANTHER | CYTOCHROME P450 FAMILY PROTEIN | 5 | 372 | - | - | |
Csa04g01861 | 437 | PANTHER | CYTOCHROME P450 FAMILY PROTEIN | 373 | 435 | - | - | |
Csa04g01861 | 437 | PRINTS | P450 superfamily signature | 330 | 341 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | PRINTS | P450 superfamily signature | 387 | 398 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | PRINTS | P450 superfamily signature | 378 | 387 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | PRINTS | P450 superfamily signature | 274 | 291 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa04g01861 | 437 | PANTHER | CYTOCHROME P450 26 | 5 | 372 | - | - | |
Csa04g01861 | 437 | PANTHER | CYTOCHROME P450 26 | 373 | 435 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01861 | Csa-Chr4:18349295 | Csa05g03046 | Csa-Chr5:30611740 | 0 | dispersed | |
Csa04g01861 | Csa-Chr4:18349295 | Csa07g02396 | Csa-Chr7:22043310 | 4.19E-83 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01861 | K09590 | - | csv:101204494 | 860.907 |