Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01861 ATGGGCTTAGCCATGGTGATTGTTGGTCTGTTTTTACTCCTCTGTTTTTGCGCTGCTTTACTCCGACGGAATGAAGTTCGATACATAAAAAATGGATTGCCTCCTGGTACAATGGGTTGGCCTGTTTTTGGTGAAACCTCTGAGTTTCTTAAACAAGGTCCGAATTTTATGAATTCTAAAAGAGCAAGGTATGGGAGCTTTTTCAAATCACATATTTTGGGATCTCCTACGGTTGTTTCTATGGATCCAGAGGTTAATAGATATATTTTAATGAATGAATCTAAAGGACTCGTCGCTGGTTATCCTCAATCTATGCTTGATATACTTGGAAAATGCAATATCGCTGCCGTACACGGCGACGCTCATAAGCTTATGAGAGGTGCTCTACTTGCTATTGTTAGTCCCACCATGATTAAAGATCGTCTTCTTCTTCAAGTTGATGAGTTTATGAGATCCCATTTGCGTAATTGGGATAGCCAAATCATTGATATTCAAGAAAAAACTAAACAGATGGCTTTCTGGACATCTTTGAAGCAGACTACCAGTATCGAATCCGGTCCATTATGGGAATCTTTCACCATAGAATTCTTTAAGCTCGTCCTGGGCACTTTCTCGCTCCCAATCGATCTTCCAGGCACGAATTACCGTATAGGAGTTCAGGCAAGGAATAACATAGTAAAGCTATTGAGGCAGCTGATTAATGAGAGAGGAAATTCAAAGATTCAAAAAGATGACATGCTTGGATATTTATTGAGTGAAGAGAACAAATATAAACTAAATGAGGAACAGATTATTGATCAAGTCATTACTGTTTTCTATTCTGGTTATGAAACTGTTTCAACAACTTCAATGATGGCTGTAAAGTTCCTTCATGATCATCCCAAAGTTCTTCAGCAACTCAGAGAAGAACATTTAGCATTAAGAGAGAAGAAAAATCCCAAGGACCCGATCGATTGGGATGATTTTAAAGCAATGGAGTTCACTCGTGCGGTAATTTTTGAAACATCAAGGCTAGCTACTGTTGTTAATGGAGTTTTGAGGAAAACTACAAAGGATTTGGAAGTAAATGGGTTTCTAATTCCCAAGGGATGGAGGATTTATGACAAAAGCTTAGAGTCCCATAATTATTTTTTCCTCTTTGGCGGTGGAATTAGGCTTTGTCCTGGCAAAGAATTGGGAATTGCAGAGGTTTCTACATTTTTACATTACTTTGTAACTAAATACAGGTGGGAAGAAGTTGGAGAATGTAAGCTCTTGAAATTTCCAAGAGTTAAAGCTCGGAATGGGTTTCACATTAGGGTTTCATCCTACTGA 1314 38.43 MGLAMVIVGLFLLLCFCAALLRRNEVRYIKNGLPPGTMGWPVFGETSEFLKQGPNFMNSKRARYGSFFKSHILGSPTVVSMDPEVNRYILMNESKGLVAGYPQSMLDILGKCNIAAVHGDAHKLMRGALLAIVSPTMIKDRLLLQVDEFMRSHLRNWDSQIIDIQEKTKQMAFWTSLKQTTSIESGPLWESFTIEFFKLVLGTFSLPIDLPGTNYRIGVQARNNIVKLLRQLINERGNSKIQKDDMLGYLLSEENKYKLNEEQIIDQVITVFYSGYETVSTTSMMAVKFLHDHPKVLQQLREEHLALREKKNPKDPIDWDDFKAMEFTRAVIFETSRLATVVNGVLRKTTKDLEVNGFLIPKGWRIYDKSLESHNYFFLFGGGIRLCPGKELGIAEVSTFLHYFVTKYRWEEVGECKLLKFPRVKARNGFHIRVSSY* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18349295 18351918 + CsaV3_4G028870.1 Csa04g01861 527471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01861 437 PRINTS E-class P450 group IV signature 55 78 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 PRINTS E-class P450 group IV signature 371 387 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 PRINTS E-class P450 group IV signature 387 405 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 SUPERFAMILY Cytochrome P450 27 434 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 Pfam Cytochrome P450 34 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 380 389 IPR017972 GO:0005506|GO:0016705
Csa04g01861 437 Gene3D Cytochrome P450 24 436 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 PANTHER CYTOCHROME P450 FAMILY PROTEIN 5 372 - -
Csa04g01861 437 PANTHER CYTOCHROME P450 FAMILY PROTEIN 373 435 - -
Csa04g01861 437 PRINTS P450 superfamily signature 330 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 PRINTS P450 superfamily signature 387 398 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 PRINTS P450 superfamily signature 378 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 PRINTS P450 superfamily signature 274 291 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g01861 437 PANTHER CYTOCHROME P450 26 5 372 - -
Csa04g01861 437 PANTHER CYTOCHROME P450 26 373 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01861 Csa-Chr4:18349295 Csa05g03046 Csa-Chr5:30611740 0 dispersed
Csa04g01861 Csa-Chr4:18349295 Csa07g02396 Csa-Chr7:22043310 4.19E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01861 K09590 - csv:101204494 860.907