Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01862 ATGTTTGGCCCCAAAGAACAAAACCCTCTTCCTCCAACTCCAAAATCCACCATGGGTAGAGGCAGAGTTGAGATCAAGAAGATTGAAAATATCAACAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTGTCTGTTCTTTGTGATGCTGAGGTCGCCATTGTTGTCTTCTCCAGTACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTATAGAGGACAGGGCATGGAATTAGATTTTCCTAAAGAGACTTTGGACCACCCAGCACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCCGAGGAGGAGATTGGAAAGCTAAAGTTAGCATATACGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAGAACTTAGAAAACCAGTTGCGGGAAGGGATCATATCTATCAAAGACAAGAAGGAGACACTACTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGGGGGAAGTAGTCATTTCAGAGAATGAAACCCTGCGAAAACAGCTCGAGGAGTTTCAGCACAGAAATAATATAACACTTCAGGAGTCTAGTCCCCTTCAGAGATCCTACTTTTCGGATTCGAAAACTGCTTCTACCAATGAGACCGAGGTCAAGACGGAGGTAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGGTTGTCATTGGATGGTCAACGAAAAAGGAAACGATCGGTTGAAGGTGCGAGCACTGACACAACCTGTAGTCAAGTAGAGTTGGAAGGGGATGCACTATTAGCAAATGACGAACTCTCTCGTCATTTTGGTATGTAA 861 44.25 MFGPKEQNPLPPTPKSTMGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRSYFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELEGDALLANDELSRHFGM* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18359391 18363306 - CsaV3_4G028880.1 Csa04g01862 527472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01862 286 Pfam K-box region 117 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01862 286 Gene3D - 30 95 IPR036879 GO:0003677|GO:0046983
Csa04g01862 286 SUPERFAMILY SRF-like 18 88 IPR036879 GO:0003677|GO:0046983
Csa04g01862 286 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Csa04g01862 286 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01862 286 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Csa04g01862 286 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Csa04g01862 286 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Csa04g01862 286 PANTHER BNAC04G24260D PROTEIN 18 253 - -
Csa04g01862 286 Coils Coil 143 163 - -
Csa04g01862 286 Coils Coil 183 203 - -
Csa04g01862 286 ProSitePatterns MADS-box domain signature. 20 74 IPR002100 GO:0003677|GO:0046983
Csa04g01862 286 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 253 - -
Csa04g01862 286 MobiDBLite consensus disorder prediction 99 118 - -
Csa04g01862 286 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Csa04g01862 286 MobiDBLite consensus disorder prediction 1 21 - -
Csa04g01862 286 CDD MADS_MEF2_like 19 87 IPR033896 GO:0000977|GO:0045944
Csa04g01862 286 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Csa04g01862 286 MobiDBLite consensus disorder prediction 209 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02884 Csa-Chr3:27586916 Csa04g01862 Csa-Chr4:18359391 2.60E-53 dispersed
Csa04g01862 Csa-Chr4:18359391 Csa03g04509 Csa-Chr3:39311564 6.64E-41 dispersed
Csa05g02467 Csa-Chr5:26463781 Csa04g01862 Csa-Chr4:18359391 9.22E-17 dispersed
Csa04g01862 Csa-Chr4:18359391 Csa06g03736 Csa-Chr6:29814029 1.99E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31587 PF01486 K-box 3.10E-12 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01862 - - csv:101205930 550.051