Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01877 | ATGGACTTCTTACAGTCTTTGGATCCTCAAATCCTCCTGGGTGTCGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTCTCTATGTATTATCCTCCTCCAAAAAAAGCAAATCTAGAGGTTGCTTGGATCCAGAGATTTTCAAGGAGTTTAAACTTATCAAGCGACTGCAACTGAGCCATAATGTGGCAAAGTTTACATTTACACTCCCTAGTCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGTGGAAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACGCCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCCCAAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTAGGAGATTTTCTTGCTGTAAAGGGTCCCAAGGGACGTTTCAGATATCAACCTGGCCAGGTCAGAGCATTTGGTATGCTTGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGGGCAATTTTAGAAAATCCAAACGACAAGACAAAGGTACATCTCATTTATGCCAACGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGACCTTCTTGCCAAAAGGTACCCCGATAGCTTCAAGCTCTACTATGTCTTAAACCAGCCTCCTGAAGCGTGGGATGGCGGCGTTGGATTTGTATCGAAGGAGATGATTCAAACCCACTGTCCTGCTCCTGCTTCTGATATTCAGATTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTTGAAGAACTTGGATATGCACCTGAGATGCTGTTCATGTTCTGA | 846 | 44.68 | MDFLQSLDPQILLGVAVAVLALAVGALYVLSSSKKSKSRGCLDPEIFKEFKLIKRLQLSHNVAKFTFTLPSPTSVLGLPIGQHISCSGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQTHCPAPASDIQILRCGPPPMNKAMAAHLEELGYAPEMLFMF* | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18545887 | 18552378 | + | CsaV3_4G029030.1 | Csa04g01877 | 527487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01877 | 281 | Gene3D | - | 140 | 281 | IPR039261 | - | |
Csa04g01877 | 281 | Gene3D | Translation factors | 40 | 139 | - | - | |
Csa04g01877 | 281 | PANTHER | NADH-CYTOCHROME B5 REDUCTASE | 2 | 281 | IPR001834 | GO:0016491 | |
Csa04g01877 | 281 | PRINTS | Cytochrome B5 reductase signature | 76 | 87 | - | - | |
Csa04g01877 | 281 | PRINTS | Cytochrome B5 reductase signature | 98 | 105 | - | - | |
Csa04g01877 | 281 | PRINTS | Cytochrome B5 reductase signature | 134 | 148 | - | - | |
Csa04g01877 | 281 | PRINTS | Cytochrome B5 reductase signature | 157 | 176 | - | - | |
Csa04g01877 | 281 | PRINTS | Cytochrome B5 reductase signature | 195 | 206 | - | - | |
Csa04g01877 | 281 | PRINTS | Cytochrome B5 reductase signature | 251 | 259 | - | - | |
Csa04g01877 | 281 | SUPERFAMILY | Ferredoxin reductase-like, C-terminal NADP-linked domain | 137 | 278 | IPR039261 | - | |
Csa04g01877 | 281 | SUPERFAMILY | Riboflavin synthase domain-like | 42 | 150 | IPR017938 | - | |
Csa04g01877 | 281 | Pfam | Oxidoreductase FAD-binding domain | 50 | 148 | IPR008333 | - | |
Csa04g01877 | 281 | CDD | cyt_b5_reduct_like | 50 | 281 | - | - | |
Csa04g01877 | 281 | Pfam | Oxidoreductase NAD-binding domain | 158 | 264 | IPR001433 | GO:0016491 | |
Csa04g01877 | 281 | ProSiteProfiles | Ferredoxin reductase-type FAD binding domain profile. | 45 | 149 | IPR017927 | GO:0016491 | |
Csa04g01877 | 281 | PANTHER | NADH-CYTOCHROME B5 REDUCTASE | 2 | 281 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00175 | Csa-Chr2:1225123 | Csa04g01877 | Csa-Chr4:18545887 | 2.51E-66 | dispersed | |
Csa03g03663 | Csa-Chr3:32607437 | Csa04g01877 | Csa-Chr4:18545887 | 5.58E-160 | dispersed | |
Csa04g01228 | Csa-Chr4:10878865 | Csa04g01877 | Csa-Chr4:18545887 | 3.63E-145 | dispersed | |
Csa04g01877 | Csa-Chr4:18545887 | Csa05g01516 | Csa-Chr5:17677296 | 1.42E-42 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01877 | K00326 | - | csv:101212569 | 528.094 |