Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01877 ATGGACTTCTTACAGTCTTTGGATCCTCAAATCCTCCTGGGTGTCGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTCTCTATGTATTATCCTCCTCCAAAAAAAGCAAATCTAGAGGTTGCTTGGATCCAGAGATTTTCAAGGAGTTTAAACTTATCAAGCGACTGCAACTGAGCCATAATGTGGCAAAGTTTACATTTACACTCCCTAGTCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGTGGAAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACGCCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCCCAAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTAGGAGATTTTCTTGCTGTAAAGGGTCCCAAGGGACGTTTCAGATATCAACCTGGCCAGGTCAGAGCATTTGGTATGCTTGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGGGCAATTTTAGAAAATCCAAACGACAAGACAAAGGTACATCTCATTTATGCCAACGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGACCTTCTTGCCAAAAGGTACCCCGATAGCTTCAAGCTCTACTATGTCTTAAACCAGCCTCCTGAAGCGTGGGATGGCGGCGTTGGATTTGTATCGAAGGAGATGATTCAAACCCACTGTCCTGCTCCTGCTTCTGATATTCAGATTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTTGAAGAACTTGGATATGCACCTGAGATGCTGTTCATGTTCTGA 846 44.68 MDFLQSLDPQILLGVAVAVLALAVGALYVLSSSKKSKSRGCLDPEIFKEFKLIKRLQLSHNVAKFTFTLPSPTSVLGLPIGQHISCSGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQTHCPAPASDIQILRCGPPPMNKAMAAHLEELGYAPEMLFMF* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18545887 18552378 + CsaV3_4G029030.1 Csa04g01877 527487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01877 281 Gene3D - 140 281 IPR039261 -
Csa04g01877 281 Gene3D Translation factors 40 139 - -
Csa04g01877 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 IPR001834 GO:0016491
Csa04g01877 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Csa04g01877 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Csa04g01877 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Csa04g01877 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Csa04g01877 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Csa04g01877 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Csa04g01877 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Csa04g01877 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Csa04g01877 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Csa04g01877 281 CDD cyt_b5_reduct_like 50 281 - -
Csa04g01877 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491
Csa04g01877 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491
Csa04g01877 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00175 Csa-Chr2:1225123 Csa04g01877 Csa-Chr4:18545887 2.51E-66 dispersed
Csa03g03663 Csa-Chr3:32607437 Csa04g01877 Csa-Chr4:18545887 5.58E-160 dispersed
Csa04g01228 Csa-Chr4:10878865 Csa04g01877 Csa-Chr4:18545887 3.63E-145 dispersed
Csa04g01877 Csa-Chr4:18545887 Csa05g01516 Csa-Chr5:17677296 1.42E-42 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01877 K00326 - csv:101212569 528.094