Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01882 ATGGCGACCCTTCTCAGAACTCCATTTTTTCAGGCAACTCCTCCCGCCAGCGTTTCCGCCTTTTCCTTATCCAAATCCACCCTAAAACCCTCTTCTTTATCCTTTACAACATCTCACTCCTTCATTTGTTGCTTCAACTCCTCCAAGTTTTCAACTCGTCCTCCTTCTCTCCGGTTCCCCAAGCGGCCTTTTGCTTCCTCCGGTGAAACGGAAATTAGCGAGCTTGAAGAGGAAGTTCGCGATTCTGAGGCGGAGGACTCTTCTGTTAGTTATACCGGTGTAGAAGATGCTACAAGTGATAATGACATAAGTGACGACTCAGAAGTTAATACTGAGGATTCCACTCAGTCAGTCATTATAGCAGCACTTCAGTCCTATAAGCAGGCGTTAGCTGATAACGATGGAGCTCAAATGGTTGAAATAGAGTCTTTTCTGAAGTCAATTGAAGATGAAAAGCTCGCAGTTGAAAGGAAGTTGAGTTCCTTAATTGAAGAACTTTCTGTAGAGAAGGATCGAGTTTTGAGAATCAGTGCTGACTTTGATAATTTTCGGAAGAGAACAGAGCGAGAACGTCTTTCATTAGTAAAAAATGCTCAAGGAGAAGTAGTAGAGACTCTATTAGGTGTCCTGGATAATTTTGAGAGGGCTAGGGCACAGATCAAGGTGGAGACAGAGGGGGAAGAGAAGATCAATCAGAGTTACCAGAGCATCTATAAGCAGTTCACCGAGATTTTGGGCTCCTTGGGTGTAGTTCCTGTTGAGACAATTGGGAAACCGTTTGACCCACTGGATCAAAGAAGAGAAAGTTACTTTGGAAGTGTGCTATCTTGGATCCGTTATCGGTTTTATGGTTGGAGCTCAATAAAAGAATTATTGAAGATAAATTTGAAGATCTAG 897 42.92 MATLLRTPFFQATPPASVSAFSLSKSTLKPSSLSFTTSHSFICCFNSSKFSTRPPSLRFPKRPFASSGETEISELEEEVRDSEAEDSSVSYTGVEDATSDNDISDDSEVNTEDSTQSVIIAALQSYKQALADNDGAQMVEIESFLKSIEDEKLAVERKLSSLIEELSVEKDRVLRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYKQFTEILGSLGVVPVETIGKPFDPLDQRRESYFGSVLSWIRYRFYGWSSIKELLKINLKI* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18605148 18608860 + CsaV3_4G029080.1 Csa04g01882 527492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01882 298 Coils Coil 65 85 - -
Csa04g01882 298 CDD GrpE 170 262 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Csa04g01882 298 PANTHER GRPE PROTEIN 1 263 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Csa04g01882 298 Gene3D - 133 246 IPR013805 -
Csa04g01882 298 PRINTS GrpE protein signature 174 190 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Csa04g01882 298 PRINTS GrpE protein signature 202 217 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Csa04g01882 298 MobiDBLite consensus disorder prediction 59 112 - -
Csa04g01882 298 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 155 249 IPR013805 -
Csa04g01882 298 Coils Coil 145 165 - -
Csa04g01882 298 PANTHER GRPE PROTEIN HOMOLOG 1 263 - -
Csa04g01882 298 Pfam GrpE 149 262 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01882 K03687 GRPE; molecular chaperone GrpE - csv:101213532 491.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01700 Csa-Chr1:13386206 Csa04g01882 Csa-Chr4:18605148 2.75E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g62 . . . . . . . . . . Cma03g00169 Cma07g01117 . . Sed14g0738 Cpe10g01091 . Bhi03g02548 Tan03g0544 Cmetu08g0522 . Hepe04g0556 . . . . . . . . . . . . . Lsi01g01740 Csa04g01882 Chy08g00207 . . . . . . . . . . Cmo03g00198 Cmo07g01167 . . . . . . . . . . . . . . . . . . . . . . . Cme08g01469
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009321 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01882 Csa_Chr04 FPKM 9.323624 11.440275 12.274853 12.877101 34.494629 31.071871 31.253029 11.501569 11.549712 10.664186