Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01903 ATGGAAGGAAAGGGAAGTGGAATTGCCAATTTTGTTGAGGGAGCACAACCTTACATTGCTATGATCTCTCTCCAATTTGGCTATGCTGGGATGAATATCATCACCAAGGTAGCTCTCAACCGCGGAATGAGCCATTACGTTCTTGTCACTTATCGGCAAGCCTTTGCCACCATTGTCCTTGCTCCCTTCGCCTTCTTCTTCGAAAGGAAAGTGAGACCCAAGATCAGTTTTGCCATGTTAATGCAGATTTTCCTTCTGGGTTTGTTAGGACCGGTGATTGATCAGAATTTTTATTATGCTGGATTGAAGCTCACTTCAACTACCTTTTCATGTGCCACCAGCAATATGCTTCCTGCAATGACATTCATCTTAGCTCTTCTTTGTAGGATGGAGAAATTGGAGATGAAGAAAGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACAGTGGGTGGAGCCATTTTGATGACTTTATACAAAGGGAATGTCATAAGCTTCTTTTGGTCTCACCATAACAATAATTATCTTCACAGCTCTTCTGCTTCTTCCAATTACTATTCCTTTGAAAGCACTTATCAAGATTGGCTCAAGGGTTCCATTCTTCTCCTTTTTGCCAATCTTGCTTGGGCTTTGTTCTTCATCGTTCAGGCAATGACATTAAGGAATTACACAGCCCATCTGTCACTTACAACCCTTGTGTGTTTCTTTGGGACTTTGCAATCCATGGCTGTCACATTTGTAATGGAACACAAAGCTTCTGTTTGGAACATTGGATGGGATATGAACCTTCTTGCTTCTGTTTATGCTGGAATAGTTTCATCAAGCATAGCTTATTATGTACAAGGGATGATTATGCAAAAGAGAGGACCTGTTTTTGTCACAGCCTTTACCCCTATGATCATGATCATTGTTGCCATTATGGGCTCCTTCATGCTTGCAGAGAAGATCTATATCGGACGTGTTGTTGGAGGTATTGTAATGGTGGTGGGGCTGTACTCAGTGCTATGGGGAAAATACAAAGATTACAAAGAAAAGGAAGCAATAATAGAAGAGATCACCACCATAGTTGAACCAGTGAAGCTTTTAATAAGTGAAGACAAATTGGAGAAAAATAAGAAGAAGAAATTAGCAACAGTAGTTGAAGAAGAAGAAGAAACGACGACATCGACATCGTTAAACGACATCGAAATGCAAAGGAACGACACAAGATCAAATGTCGACGACAATAATCATAATAATGTTGCAACATTGCGTTGTCCTTCTCCACTACCCATTGTTGTTGTTATAGCTATGAATGAAGCACCACCAAAAGTTTTTTATTAA 1326 40.5 MEGKGSGIANFVEGAQPYIAMISLQFGYAGMNIITKVALNRGMSHYVLVTYRQAFATIVLAPFAFFFERKVRPKISFAMLMQIFLLGLLGPVIDQNFYYAGLKLTSTTFSCATSNMLPAMTFILALLCRMEKLEMKKVRCQAKVVGTLVTVGGAILMTLYKGNVISFFWSHHNNNYLHSSSASSNYYSFESTYQDWLKGSILLLFANLAWALFFIVQAMTLRNYTAHLSLTTLVCFFGTLQSMAVTFVMEHKASVWNIGWDMNLLASVYAGIVSSSIAYYVQGMIMQKRGPVFVTAFTPMIMIIVAIMGSFMLAEKIYIGRVVGGIVMVVGLYSVLWGKYKDYKEKEAIIEEITTIVEPVKLLISEDKLEKNKKKKLATVVEEEEETTTSTSLNDIEMQRNDTRSNVDDNNHNNVATLRCPSPLPIVVVIAMNEAPPKVFY* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18776633 18780793 - CsaV3_4G029290.1 Csa04g01903 527513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01903 441 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Csa04g01903 441 Pfam EamA-like transporter family 198 336 IPR000620 GO:0016020|GO:0016021
Csa04g01903 441 Pfam EamA-like transporter family 18 157 IPR000620 GO:0016020|GO:0016021
Csa04g01903 441 Coils Coil 366 386 - -
Csa04g01903 441 PANTHER WAT1-RELATED PROTEIN 11 367 - -
Csa04g01903 441 PANTHER WAT1-RELATED PROTEIN 11 367 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03691 Csa04g01903 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03691 Csa-Chr3:32842765 Csa04g01903 Csa-Chr4:18776633 2.37E-142 dispersed
Csa03g03692 Csa-Chr3:32850918 Csa04g01903 Csa-Chr4:18776633 1.43E-139 dispersed
Csa04g01808 Csa-Chr4:17728900 Csa04g01903 Csa-Chr4:18776633 5.38E-120 dispersed
Csa04g01903 Csa-Chr4:18776633 Csa05g02138 Csa-Chr5:24490966 2.98E-158 dispersed
Csa04g01903 Csa-Chr4:18776633 Csa04g01463 Csa-Chr4:14463477 5.05E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01903 - - csv:101216496 761.14