Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01908 ATGAGAGAAGAACACTCGAATTGGTTTTCTAGATGGGAAGACGAGCTCCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCGTCTCCGCCGCTTTCAAATCCTCTCCCTGGTTCCGGCAACGGAATTGTGCCGCCAAACTCCGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGAGCCGCCAGCGACGAGCCGGCTCGGACTCTCAAGCGGCCGCGCCTTGTTTGGACGCCTCAACTTCACAAGCGATTTGTTGATGCTGTTGCTCATTTGGGTATAAAAAATGCTGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGGTTGACTAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGAATGCAGGGCTTGTCCGGTGGCGGCGGCGGCGGAGGTGCTGCCTTGGTTGGTTCATCCGATCCCGCTACTGACCATTTGTTTGCTAGCTCACCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTATGTTCCCATGGCCACTCTGCAGCAACACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCTGTCGCCGGCCATACACAGCTCCAGCCGCCGTATCATCGGCAGGTTGGACATTTTGGGTCGCCGCCAAATGGTCAGTTCGAGCACCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAACACCAGTGCATAATTCTGTTCCTAATTACATTGAAGATTTGGAATCAGCCAATGCCACTGGAGGACGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 906 52.76 MREEHSNWFSRWEDELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIVPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGAALVGSSDPATDHLFASSPVPPHLLHSARTSSDHFLPYVPMATLQQHHHHQQQMAAAAAVAGHTQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGTPVHNSVPNYIEDLESANATGGRKVLTLFPTGDD* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18833199 18834104 - CsaV3_4G029340.1 Csa04g01908 527518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01908 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Csa04g01908 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Csa04g01908 301 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Csa04g01908 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 301 IPR044841 GO:0003700|GO:0006355
Csa04g01908 301 MobiDBLite consensus disorder prediction 1 91 - -
Csa04g01908 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Csa04g01908 301 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 301 - -
Csa04g01908 301 Gene3D - 94 156 - -
Csa04g01908 301 MobiDBLite consensus disorder prediction 1 18 - -
Csa04g01908 301 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03685 Csa-Chr3:32785961 Csa04g01908 Csa-Chr4:18833199 3.23E-121 dispersed
Csa04g01908 Csa-Chr4:18833199 Csa06g01467 Csa-Chr6:12460237 4.13E-37 dispersed
Csa04g01908 Csa-Chr4:18833199 Csa01g02442 Csa-Chr1:21646512 6.45E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31589 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01908 - - csv:101216969 545.043