Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01909 ATGGCTTCAAGACCAATCGTTCCCCAACAAATCAGAGGTGAGGCAGTGAACGGCGGAGGAAAACAAGCAAAGGGCGCAGCGGGAGCGGAGGCAAAGAACCGCCGTGCACTGGGTGATATCGGGAATTTGGTAACTGTTCGAGGAATTGATGCAAAGGCAAATCGCCCTATTACGAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCTCAAGCTGCTGCAAAGGCTGAAAACAATAAGAAACAAGTGCCTGTTACTATAGATGGGGCTGCTCCCATTCTCGATGCTGGTGTTGTGGCTGTAAAGAAAGCAGGTCCTAAGCCAGCCACTAAGAAAGTCATTGTAAAACCAACATCGGAGGTTATTGATATAAGTCCTGACACTGTCGAAAAAGTTGAAGAGAAGGAAGCCAAATGTGCAAAGAAGAAAAAGGAAGGAGAAGGGCCCGCAAAGAAGAAAGCGCAGACTCTTACTTCAGTCTTGACTGCTAGAAGCAAGGCTGCCTGTGGTATAACCAAGAAACCTAAAGAACAGATCTTTGATATTGACGCTGCAGATGTTGGTAACGAGTTGGCAGCTGTTGAATATGTCGAGGATATTTACACCTTCTATAAAGAAGCTGAGAACGAGAGCAGACCTCATGATTATATGGATTCACAACCTGAAATAAACCCTTCAATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAATTTGAACTTTCACCCGAAACTTTCTACCTCACGATCAATATAATCGATCGTTTCCTTGCGACAAAGATTGTTCCAAGAAGGGAATTGCAATTGGTGGGAATTGGAGCAATGCTTATAGCCTCCAAGTATGAAGAAATTTGGGCTCCAGAGGTAAATGACTTTGTGTGCCTTTCGGATAGAGCTTACACTCATCAACAGATTCTAGTGATGGAGAAGAAGATACTTGGGAAGTTGGAGTGGACCTTGACTGTTCCCACACCATATGTTTTCCTTGCTCGATTTATCAAGGCATCCAAAGACTCGAACCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGAATAATGCATTACAATACGGCAATGATATATTGCCCGTCGATGATTGCTGCCTCAGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAACACCTGCTTGGGATGAAACCCTAAAAAAGCACACGGGTTTCTCGGAACCGCAGTTAATTGATTGTGCAAAGCTTTTGGTGGGATTCCATGGGGGAGCAGACAAGAACAAACTTCAAGTAATATACAGAAAATACTCGAGTTCAGAGCGAGGAGCGGTAGCGTTGATTCAGCCAGCCAAAGCTTTGTTGGCTCTAGGTGGTGGTGTCCATTGA 1368 45.03 MASRPIVPQQIRGEAVNGGGKQAKGAAGAEAKNRRALGDIGNLVTVRGIDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVTIDGAAPILDAGVVAVKKAGPKPATKKVIVKPTSEVIDISPDTVEKVEEKEAKCAKKKKEGEGPAKKKAQTLTSVLTARSKAACGITKKPKEQIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINPSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHQQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMIYCPSMIAASAVYAARCTLKKTPAWDETLKKHTGFSEPQLIDCAKLLVGFHGGADKNKLQVIYRKYSSSERGAVALIQPAKALLALGGGVH* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18838613 18841656 - CsaV3_4G029350.1 Csa04g01909 527519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01909 455 CDD CYCLIN 323 412 IPR013763 -
Csa04g01909 455 Pfam Cyclin, N-terminal domain 198 322 IPR006671 -
Csa04g01909 455 SUPERFAMILY Cyclin-like 324 445 IPR036915 -
Csa04g01909 455 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 21 449 - -
Csa04g01909 455 Pfam Cyclin, C-terminal domain 325 443 IPR004367 -
Csa04g01909 455 SMART cyclin_7 232 316 IPR013763 -
Csa04g01909 455 SMART cyclin_7 329 413 IPR013763 -
Csa04g01909 455 ProSitePatterns Cyclins signature. 227 258 IPR006671 -
Csa04g01909 455 Gene3D - 212 323 - -
Csa04g01909 455 PANTHER CYCLINS 21 449 IPR039361 -
Csa04g01909 455 Gene3D - 198 440 - -
Csa04g01909 455 PIRSF Cyclin_A_B_D_E 1 452 IPR039361 -
Csa04g01909 455 MobiDBLite consensus disorder prediction 1 32 - -
Csa04g01909 455 SMART Cyclin_C_2 325 444 IPR004367 -
Csa04g01909 455 CDD CYCLIN 226 315 IPR013763 -
Csa04g01909 455 SUPERFAMILY Cyclin-like 187 322 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01909 Csa-Chr4:18838613 Csa06g02485 Csa-Chr6:22162575 5.41E-142 dispersed
Csa04g01909 Csa-Chr4:18838613 Csa04g02698 Csa-Chr4:26118950 2.85E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01909 K21777 - csv:101217210 825.083