Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01951 ATGGGATCTTCTGTTGCTGCAATGGGCATGGTTTCCGACTCCAAATTCCATGTTCTTGCCGTTGATGATAGCGTTATTGATAGGAAATTGATTGAAAAACTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGGAGTAAAGCTTTGGAGTTTTTGGGTTATGACCCTGGAAATAGCTCGATTCCTTCTGTTTCATCTAACCATCACCATCACCATCAGGAAGTGGATGTGAATCTTGTAATTACCGATTACTGTATGCCTGAAATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCTAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCAACTTTCGGACGTCAACAGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAGAACAACAGAAGACCAACCTGATTCAAGCCAATCTCAAGCACTAGAACAACAACAACAACGTGAACAAGAACAATCACGACCGCTACTGCAGCAGATCCCAACATCGCTGCAAGATCAAGATCAGATACAATCTGTACCACTTCTGCCAACACCACCACAGGAGCAAGAACAGTTGCAATTACTCCCTCCAACACCGCCTCAACAATCAAACAACAACAAAAGGAAGGCAATGGAAGATGGACTTTCTCCAGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 786 42.75 MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIEKLLKTSSYQVTTVDSGSKALEFLGYDPGNSSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVQLSDVNRLRPHMLKTKLKCDKPERTTEDQPDSSQSQALEQQQQREQEQSRPLLQQIPTSLQDQDQIQSVPLLPTPPQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19429525 19432587 + CsaV3_4G029770.1 Csa04g01951 527561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01951 261 MobiDBLite consensus disorder prediction 209 240 - -
Csa04g01951 261 CDD REC_typeA_ARR 18 148 - -
Csa04g01951 261 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 11 259 - -
Csa04g01951 261 SUPERFAMILY CheY-like 14 155 IPR011006 -
Csa04g01951 261 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160
Csa04g01951 261 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 259 IPR045279 GO:0009736
Csa04g01951 261 SMART REC_2 16 149 IPR001789 GO:0000160
Csa04g01951 261 MobiDBLite consensus disorder prediction 209 261 - -
Csa04g01951 261 MobiDBLite consensus disorder prediction 156 190 - -
Csa04g01951 261 Pfam Response regulator receiver domain 18 144 IPR001789 GO:0000160
Csa04g01951 261 Gene3D - 17 244 - -
Csa04g01951 261 MobiDBLite consensus disorder prediction 169 190 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03727 Csa04g01951 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03727 Csa-Chr3:33106666 Csa04g01951 Csa-Chr4:19429525 3.57E-80 dispersed
Csa04g01951 Csa-Chr4:19429525 Csa05g01629 Csa-Chr5:19338596 1.87E-71 dispersed
Csa04g01951 Csa-Chr4:19429525 Csa05g02375 Csa-Chr5:25975705 1.80E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31592 PF00072 Response_reg 9.50E-19 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01951 K14492 - csv:101220999 454.521