Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01970 | ATGATACCAACAATGTCAAAATGGATGAGTTTAGTAAGCATCATGTTGTTGGTGGGAGTGAGTTTAAGGTTTAGAAGTGTAAATGGGTTGAATATGGGATATTACTTGATGAGTTGTCCGTTTGTTGATCCTATTGTCAAGAACACAGTCAACCGAGCTCTTCAAAATGATCCCACTCTAGCTGCTTCTCTTATCCGAATGCATTTTCACGATTGTTTCGTTGAGGGATGCGATGGGTCAATATTGATTGATTCAACAAGAGACAACACAGCAGAAAAGGACTCTCCTGCTAACCTTAGCTTACGAGGCTATGAGGTTATTGATGAGATTAAAGAGCAACTTGAACGCGAATGTCCTGGTGTTGTTTCTTGTGCCGACGTTATCGCTATGGCAGCCAGAGATGCAGTCTTTTGGGCAGGGGGTCCATTTTACGAGATACCGAAAGGAAGGAAGGACGGAAGCAGATCGAGAATCGAAGACACTGTTAACTTACCTTCTCCTTTCTTAAATGCTTCTCAGCTAATTAATACTTTTGCTCAACGTGGCTTTACTCCTCAACAAATGGTTGCACTTTCCGGAGCACATACATTGGGAGTGGCAAGATGCATATCATTCAAAGGGAGACTTGACGGCAACGACCCTCTTCTAAGTCCAAACTTTGGAAGAGCATTGTCAAGAACATGCAGCAATGGAGACAATGCGCTACAAACATTTGATGCCACACCTGACAGCTTCGACAACGTCTATTACAATGCGGTGTCGAGAGGCGCTGGAGTTTTGTTTTCGGACCAGACATTGTTCGCTAGCCCTCGTACGAGAGGCATTGTCACAGCCTATGCCATGAACCAAGCCCTGTTCTTCTTGGACTTTCAACAAGCCATCATAAAAATGGGGTTACTTGATGTGAAGGAAGGTTATAGAGGCCAAGTTCGTCGCAACTGCCGTAGAGTTAATTAA | 957 | 43.89 | MIPTMSKWMSLVSIMLLVGVSLRFRSVNGLNMGYYLMSCPFVDPIVKNTVNRALQNDPTLAASLIRMHFHDCFVEGCDGSILIDSTRDNTAEKDSPANLSLRGYEVIDEIKEQLERECPGVVSCADVIAMAARDAVFWAGGPFYEIPKGRKDGSRSRIEDTVNLPSPFLNASQLINTFAQRGFTPQQMVALSGAHTLGVARCISFKGRLDGNDPLLSPNFGRALSRTCSNGDNALQTFDATPDSFDNVYYNAVSRGAGVLFSDQTLFASPRTRGIVTAYAMNQALFFLDFQQAIIKMGLLDVKEGYRGQVRRNCRRVN* | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 19698399 | 19700783 | + | CsaV3_4G029960.1 | Csa04g01970 | 527580 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01970 | 318 | PANTHER | PEROXIDASE 47 | 18 | 316 | - | - | |
Csa04g01970 | 318 | Gene3D | - | 34 | 318 | - | - | |
Csa04g01970 | 318 | Pfam | Peroxidase | 46 | 281 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | CDD | secretory_peroxidase | 29 | 317 | IPR033905 | GO:0004601|GO:0042744 | |
Csa04g01970 | 318 | PRINTS | Haem peroxidase superfamily signature | 61 | 75 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Haem peroxidase superfamily signature | 122 | 139 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Haem peroxidase superfamily signature | 140 | 152 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Haem peroxidase superfamily signature | 187 | 202 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Haem peroxidase superfamily signature | 238 | 253 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | ProSiteProfiles | Plant heme peroxidase family profile. | 29 | 318 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | ProSitePatterns | Peroxidases active site signature. | 61 | 72 | IPR019794 | GO:0004601 | |
Csa04g01970 | 318 | SUPERFAMILY | Heme-dependent peroxidases | 29 | 318 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Plant peroxidase signature | 39 | 58 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Plant peroxidase signature | 63 | 83 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Plant peroxidase signature | 102 | 115 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Plant peroxidase signature | 121 | 131 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Plant peroxidase signature | 140 | 155 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Plant peroxidase signature | 186 | 198 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Plant peroxidase signature | 236 | 251 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Plant peroxidase signature | 252 | 269 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | PRINTS | Plant peroxidase signature | 292 | 305 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa04g01970 | 318 | Gene3D | Peroxidase, domain 2 | 165 | 297 | - | - | |
Csa04g01970 | 318 | PANTHER | PEROXIDASE 25-RELATED | 18 | 316 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01580 | Csa-Chr1:11428627 | Csa04g01970 | Csa-Chr4:19698399 | 4.40E-46 | dispersed | |
Csa04g01970 | Csa-Chr4:19698399 | Csa06g03357 | Csa-Chr6:27981854 | 3.52E-89 | dispersed | |
Csa04g01970 | Csa-Chr4:19698399 | Csa07g00375 | Csa-Chr7:2787973 | 3.62E-82 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01970 | K00430 | - | csv:101202852 | 640.958 |