Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01970 ATGATACCAACAATGTCAAAATGGATGAGTTTAGTAAGCATCATGTTGTTGGTGGGAGTGAGTTTAAGGTTTAGAAGTGTAAATGGGTTGAATATGGGATATTACTTGATGAGTTGTCCGTTTGTTGATCCTATTGTCAAGAACACAGTCAACCGAGCTCTTCAAAATGATCCCACTCTAGCTGCTTCTCTTATCCGAATGCATTTTCACGATTGTTTCGTTGAGGGATGCGATGGGTCAATATTGATTGATTCAACAAGAGACAACACAGCAGAAAAGGACTCTCCTGCTAACCTTAGCTTACGAGGCTATGAGGTTATTGATGAGATTAAAGAGCAACTTGAACGCGAATGTCCTGGTGTTGTTTCTTGTGCCGACGTTATCGCTATGGCAGCCAGAGATGCAGTCTTTTGGGCAGGGGGTCCATTTTACGAGATACCGAAAGGAAGGAAGGACGGAAGCAGATCGAGAATCGAAGACACTGTTAACTTACCTTCTCCTTTCTTAAATGCTTCTCAGCTAATTAATACTTTTGCTCAACGTGGCTTTACTCCTCAACAAATGGTTGCACTTTCCGGAGCACATACATTGGGAGTGGCAAGATGCATATCATTCAAAGGGAGACTTGACGGCAACGACCCTCTTCTAAGTCCAAACTTTGGAAGAGCATTGTCAAGAACATGCAGCAATGGAGACAATGCGCTACAAACATTTGATGCCACACCTGACAGCTTCGACAACGTCTATTACAATGCGGTGTCGAGAGGCGCTGGAGTTTTGTTTTCGGACCAGACATTGTTCGCTAGCCCTCGTACGAGAGGCATTGTCACAGCCTATGCCATGAACCAAGCCCTGTTCTTCTTGGACTTTCAACAAGCCATCATAAAAATGGGGTTACTTGATGTGAAGGAAGGTTATAGAGGCCAAGTTCGTCGCAACTGCCGTAGAGTTAATTAA 957 43.89 MIPTMSKWMSLVSIMLLVGVSLRFRSVNGLNMGYYLMSCPFVDPIVKNTVNRALQNDPTLAASLIRMHFHDCFVEGCDGSILIDSTRDNTAEKDSPANLSLRGYEVIDEIKEQLERECPGVVSCADVIAMAARDAVFWAGGPFYEIPKGRKDGSRSRIEDTVNLPSPFLNASQLINTFAQRGFTPQQMVALSGAHTLGVARCISFKGRLDGNDPLLSPNFGRALSRTCSNGDNALQTFDATPDSFDNVYYNAVSRGAGVLFSDQTLFASPRTRGIVTAYAMNQALFFLDFQQAIIKMGLLDVKEGYRGQVRRNCRRVN* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19698399 19700783 + CsaV3_4G029960.1 Csa04g01970 527580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01970 318 PANTHER PEROXIDASE 47 18 316 - -
Csa04g01970 318 Gene3D - 34 318 - -
Csa04g01970 318 Pfam Peroxidase 46 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 CDD secretory_peroxidase 29 317 IPR033905 GO:0004601|GO:0042744
Csa04g01970 318 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 ProSiteProfiles Plant heme peroxidase family profile. 29 318 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Csa04g01970 318 SUPERFAMILY Heme-dependent peroxidases 29 318 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01970 318 Gene3D Peroxidase, domain 2 165 297 - -
Csa04g01970 318 PANTHER PEROXIDASE 25-RELATED 18 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01580 Csa-Chr1:11428627 Csa04g01970 Csa-Chr4:19698399 4.40E-46 dispersed
Csa04g01970 Csa-Chr4:19698399 Csa06g03357 Csa-Chr6:27981854 3.52E-89 dispersed
Csa04g01970 Csa-Chr4:19698399 Csa07g00375 Csa-Chr7:2787973 3.62E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01970 K00430 - csv:101202852 640.958