Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02015 ATGCCAAACATGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGTCACTCTAAACCTTCCGACTTAGAAACCATCACTTGCAAAACCTGCGTCACTCCTTGGCATGTCCCTTGCCTCTCAAACCCCCCTGAAACCCTAGAATCTACTCTTCAGTGGGACTGTCCCGATTGTTCACTCCCTTCTCAGGATGCACTCCTTCCTCCCCCTTCCAATTCTCCACTCCCCATTCACCCTTCTAATGATCTCATTGCTGCGATTCGTGCCATTGAAGCTGATTCTTCCCTTGCTGACTCCGACAAGGCAAAGAAACGCCAGCAGCTGCTTACTGGAAACTCACTCTCCCATGAGATCAATGATGTTAACACTAAACAAGGGGACGATGTTTTGGATTTGTTTGATGAGAGGTTGAACTGTTCTTTCTGCATTCAGTTACCGGATAGGCCAGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACTAGGGAAGAAAACTTGTGCAAAGTGCCGCTGCGTGATTCCCACTAAAATGGCAAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCCAAATTGTCAAAATCATCTGTTTCTGGAGGACCACAGAAGGCTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGGAAAGCTAATGCTGCAAGTGGGAAAATATTTGTTACAATTCCATCCGACCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGCCAATGGGGTGCTCACTTTCCACATATTGCAGGTATAGCGGGCCAGTCAAATAATGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGAGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGAAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATATAACAAAGCGCTACAAGTTAGTTGCTTGAAAGGCTATCCTGTTAGAGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGTTACGATGGAATTTATAGGATTGAGAAGTGTTGGCGAAAAGTGGGAATTCAGGGCTTCAAAGTGTGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGATCATGGAGATCGACCTAGACCCTTACCATCAATTCCAGAGTTAAAAAAGGCAACAAATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAAAAAGATAGCCAGTGGAAGTGGAGCAAACCTCCCCCAATGAGCACGAGACCAGTAGAAACCGAAGATCCTGCCACTGGGAAGAGGTCTAGGAGAAAAATCAGGCAATCGCACAACATGAATGTACGGGAAAGGTTATTGAAAGAGTTTAGCTGCCTTATATGTCGAGAGGTGATGAGTATGCCAATTACTACGCCATGTGCCCATAACTTCTGCAAGTCATGCCTGGAAGGTGCTTTTGCGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGAAGTCTTAGATCACGAAAGAATGTCATGGCTTGTCCTTGTTGCCCGACAGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCCTTGAAAGGTAAGCTTGAAGAAGAAGGGGATGCGTCTGAGAAGCTTTGTGAAGAAGAGATGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGAAGGAGGAGGAAAAGGAGGAGGAGGAGGAGGAGGGAAAAGGTGAAGTGGAAAGTAGAAAACAAGCAAAGGTGGAGGTTAATGGTGGGGAGGAAAATCCTATCATATGA 1977 45.73 MPNMVSQLPCDGDGICMLCHSKPSDLETITCKTCVTPWHVPCLSNPPETLESTLQWDCPDCSLPSQDALLPPPSNSPLPIHPSNDLIAAIRAIEADSSLADSDKAKKRQQLLTGNSLSHEINDVNTKQGDDVLDLFDERLNCSFCIQLPDRPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCVIPTKMASQPRINSTLVVAIRMAKLSKSSVSGGPQKAYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHIAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDDHGDRPRPLPSIPELKKATNITERKEGPSWDFDEKDSQWKWSKPPPMSTRPVETEDPATGKRSRRKIRQSHNMNVRERLLKEFSCLICREVMSMPITTPCAHNFCKSCLEGAFAGKTFLRERSSGGRSLRSRKNVMACPCCPTDISDFLQNLQVNRELLDVIESLKGKLEEEGDASEKLCEEEMEEEEEEEEEEKEEEKEEEEEEGKGEVESRKQAKVEVNGGEENPII* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20255367 20263976 - CsaV3_4G030410.1 Csa04g02015 527625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02015 658 Coils Coil 605 638 - -
Csa04g02015 658 CDD RING-HC 142 180 - -
Csa04g02015 658 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Csa04g02015 658 SUPERFAMILY RING/U-box 133 188 - -
Csa04g02015 658 SUPERFAMILY FYVE/PHD zinc finger 7 65 IPR011011 -
Csa04g02015 658 SMART ring_2 514 570 IPR001841 -
Csa04g02015 658 SMART ring_2 142 180 IPR001841 -
Csa04g02015 658 Pfam RING-type zinc-finger 514 549 IPR027370 -
Csa04g02015 658 MobiDBLite consensus disorder prediction 426 440 - -
Csa04g02015 658 Gene3D - 241 437 IPR036987 -
Csa04g02015 658 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 5 644 - -
Csa04g02015 658 SMART PHD_3 15 62 IPR001965 -
Csa04g02015 658 SUPERFAMILY RING/U-box 507 595 - -
Csa04g02015 658 SUPERFAMILY PUA domain-like 244 440 IPR015947 -
Csa04g02015 658 MobiDBLite consensus disorder prediction 635 649 - -
Csa04g02015 658 ProSiteProfiles Zinc finger PHD-type profile. 13 64 IPR019787 -
Csa04g02015 658 SMART G9a_1 265 422 IPR003105 -
Csa04g02015 658 MobiDBLite consensus disorder prediction 426 496 - -
Csa04g02015 658 MobiDBLite consensus disorder prediction 605 634 - -
Csa04g02015 658 MobiDBLite consensus disorder prediction 447 469 - -
Csa04g02015 658 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Csa04g02015 658 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Csa04g02015 658 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Csa04g02015 658 Pfam SAD/SRA domain 273 421 IPR003105 -
Csa04g02015 658 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 644 IPR045134 -
Csa04g02015 658 MobiDBLite consensus disorder prediction 599 658 - -
Csa04g02015 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 70 IPR013083 -
Csa04g02015 658 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
Csa04g02015 658 ProSitePatterns Zinc finger PHD-type signature. 16 61 IPR019786 -
Csa04g02015 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 600 IPR013083 -
Csa04g02015 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 208 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02015 Csa-Chr4:20255367 Csa05g00936 Csa-Chr5:7590266 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02015 K10638 - csv:101220457 1306.97