Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02020 ATGGCAGAGGAGGCGTTGGCGGCAGTGACTGGTTTCTTGCACAAGCTTTTAACCGGACGGTGGTTAATGTTATTTGCATCACTAATAATCATGGCAATGAACGGATCAGGCTACATGTTCGGCCTCTACTCCAACCACATCAAATCTGTTTTTGGCTATGATCAATCGACTCTTAATTTGATCAGTTTTTTTAAGGACTTGGGTGCCAATCTTGGGGTGGTTTCCGGCCTCCTTTACGAGGTGGCACCACCGTGGCTGGTTCTCTCGGTTGGCGCCATCCTTAACTTCTTCGGTTACTTCATGTTATGGTTGGCGGTTTCTGGCCGTACCGCTGCGCCGGGGTTGAGGTTGATGTGTGTTTACATGAGCGTTGCTGCTAACTCATTGTCTTTTGGTAATACGGCGGCTTTGGTTACTTGTCTTCGCAACTTTCCTCTTCATCGTGGTTGTCTTCTTGGCCTTCTCAAAGGGTACATAGGTTTAAGTGGTGCAATAATGACACAACTTTACCATGCCATGTATGGAGAGGACAACCCAGAAGGCCTTATTTTGATGATTGCTTGGCTCCCATCAGCCATTTCATTAGCTTCCCTTCCATTCATTCGACTTATAAACTCCAACAACAACCAAAGAAATGACCTCAAACCATTCTATAACCTTCTTTACATATCCCTCGCCCTTGCTGCTTCTCTTCTTGCCATTATTATCCCTCAAACTAAAACTCACTTCTCTAAAACTGACTACATTGCTGTTGCTTCTCCCATCGTTCTCTTTCTCCTCCTCCCGCTTGCCGTCGTCGTAAACCAAGAACTCACCCTCCACAATCACCCACCTCCAATAACGTCAATACTAGTACAATCACCGTCACCACAGCTAACAACGATGTCAAGGAGTAGTAACTGGTACAAAAACATCTTCACGGGGCGACCAATGCTCGGAGACGACCACACCATCTTGCAAGCGATTTTGAGTGTGGATATGGCAATTCTATTTGTGGTGACGACGTGCGGTGTTGGCGGAGCACTGACGGTGGTTGACAACGTTGCACAAATAGGTGCTTCGTTAGACTATCCAACACGTAGCATTTCGAGTTTCGTGTCACTAATGAGCATTTGGAACTTCCTAGGACGTGTAATGGCAGGTTACGTATCTGAATTTCTTTTGATCAAGTACCGACTCCCTCGGCCGTTGATGCTCACATTTGTAATACTACTATCTTGCATTGGCCACATTATGATTGCGTTTGGAGTACCAAACTCTCTTTATTTTGCATCCATCATCACTGGATTCTGCTTGGGAGCGCAACTTCCATTAACGGCCACAATCATATCTGATCTCTTTGGATTGAAACATTATTCGACGTTGTACAATGTGGGATCAGTGTCAAGCCCAGTTGGGTCTTACATTTTCAATGTTAGATTGGCGGGTAGGATTTATGATAGAGAGGGGGAAAGGCAAAGGAATGTGATGAGAAATGTGTGTAAAGGAGTGAGGTGTTATAGGGTTAGTTTTATAATAATCATAGGGGCTTGTGTTTTTGGTAGTTTGGTTTCGGTTATTTTGGTGCTTAGGACAAGAAATTTTTACAAAGATGACATATATGCAAGGTTTAGAAAGGGAGAAGAAATTAAATCACCACTACAAGACACTACCACTACTACTACTACTTTTTCCCTCTCACATCTACAAGTTGCTACAATGAAACCTTTGAAATGTATCACTTTTACTTCCTAA 1734 43.71 MAEEALAAVTGFLHKLLTGRWLMLFASLIIMAMNGSGYMFGLYSNHIKSVFGYDQSTLNLISFFKDLGANLGVVSGLLYEVAPPWLVLSVGAILNFFGYFMLWLAVSGRTAAPGLRLMCVYMSVAANSLSFGNTAALVTCLRNFPLHRGCLLGLLKGYIGLSGAIMTQLYHAMYGEDNPEGLILMIAWLPSAISLASLPFIRLINSNNNQRNDLKPFYNLLYISLALAASLLAIIIPQTKTHFSKTDYIAVASPIVLFLLLPLAVVVNQELTLHNHPPPITSILVQSPSPQLTTMSRSSNWYKNIFTGRPMLGDDHTILQAILSVDMAILFVVTTCGVGGALTVVDNVAQIGASLDYPTRSISSFVSLMSIWNFLGRVMAGYVSEFLLIKYRLPRPLMLTFVILLSCIGHIMIAFGVPNSLYFASIITGFCLGAQLPLTATIISDLFGLKHYSTLYNVGSVSSPVGSYIFNVRLAGRIYDREGERQRNVMRNVCKGVRCYRVSFIIIIGACVFGSLVSVILVLRTRNFYKDDIYARFRKGEEIKSPLQDTTTTTTTFSLSHLQVATMKPLKCITFTS* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20332608 20335041 - CsaV3_4G030460.1 Csa04g02020 527630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02020 577 CDD MFS_Mch1p_like 19 514 - -
Csa04g02020 577 SUPERFAMILY MFS general substrate transporter 10 202 IPR036259 -
Csa04g02020 577 PANTHER FACILITATOR SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 540 - -
Csa04g02020 577 Pfam Major Facilitator Superfamily 350 524 IPR011701 GO:0022857|GO:0055085
Csa04g02020 577 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 5 540 - -
Csa04g02020 577 SUPERFAMILY MFS general substrate transporter 224 528 IPR036259 -
Csa04g02020 577 Pfam Nodulin-like 20 267 IPR010658 -
Csa04g02020 577 Gene3D MFS general substrate transporter like domains 323 529 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02020 Csa-Chr4:20332608 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa07g00091 Csa-Chr7:846941 Csa04g02020 Csa-Chr4:20332608 6.90E-92 dispersed
Csa04g02020 Csa-Chr4:20332608 Csa05g02773 Csa-Chr5:28438039 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02020 - - csv:101220925 1104.74