Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02044 ATGACTGATATGATGGTAAAGGAAAATTTTGTGCAGAGAGTAGATGACGAGGCTAAAGCGAATGATTGTTCGACTGTTGGGAGTGAAGATTTGGGTTCTCAGTCTCGCCATAGTATAGGGAAGGAATCTGGGGCCAGTTGTCGTGTGTGCCAATGTGTTGAATCTGACAGAAGAGGTGATGCGGTTTTAGGATTTCTTGGTATCACTCCTCCAATTATGGAAGCGAGAAAATGTGATGGGGATCGGGATTCTAAGCCTGAGAAGCAGAGTACAGAAAATGTTGACGGTGGTTCTATGCTAAAAAAAGATGTTAAAGGGGATTCGGGTTCAATTAAGTTCATAGGGCCTAATGGGGAGGTTTTCATTTGCAAAACTGATATTGAAATGGGTTCATGTCATCATGAAGATGGATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTACGCATGTGCTCTCAAGTGGTTTGTTAGCCATGGTTCTACAGTTTGTGAAATCTGTGGATGTATTGCGGAAAATATTAGAACCGACGACTTTAGGAAGGTTGTGAGTTCTTTGAAAGAATACGAAGCTTTAAGAGAGAGAACTGTTAGTGGGGTACCTAATCCTATGCAGACTACTGCTAGTACTGATATTGATCCTGATGCCGTTGCGGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCGTTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAACTTCCCAGGTTGTTTCCGAACATCTGAATACCATCTCAGAAAATGTTGTTCATGCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTTCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTAGTGGTTTTCTTCCGCTTTTTCGTGCTTACCAGGATAAAATACGGACCTGCACGATACTGGGCCATTTTGTTTGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCGTCGAGGACACACGCTGCTCATACGACGTAG 1104 44.29 MTDMMVKENFVQRVDDEAKANDCSTVGSEDLGSQSRHSIGKESGASCRVCQCVESDRRGDAVLGFLGITPPIMEARKCDGDRDSKPEKQSTENVDGGSMLKKDVKGDSGSIKFIGPNGEVFICKTDIEMGSCHHEDGLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTVSGVPNPMQTTASTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTATSQVVSEHLNTISENVVHAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20643086 20657994 - CsaV3_4G030700.1 Csa04g02044 527654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02044 367 ProSiteProfiles Zinc finger RING-CH-type profile. 115 179 IPR011016 GO:0008270
Csa04g02044 367 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 4 366 - -
Csa04g02044 367 PANTHER ZINC FINGER, RING-CH-TYPE 4 366 - -
Csa04g02044 367 SUPERFAMILY RING/U-box 134 174 - -
Csa04g02044 367 SMART ringv_2 132 173 IPR011016 GO:0008270
Csa04g02044 367 MobiDBLite consensus disorder prediction 75 100 - -
Csa04g02044 367 MobiDBLite consensus disorder prediction 21 40 - -
Csa04g02044 367 Pfam RING-variant domain 136 172 IPR011016 GO:0008270
Csa04g02044 367 MobiDBLite consensus disorder prediction 75 90 - -
Csa04g02044 367 MobiDBLite consensus disorder prediction 26 40 - -
Csa04g02044 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 181 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02044 Csa-Chr4:20643086 Csa01g02480 Csa-Chr1:21906292 5.92E-09 dispersed
Csa04g02044 Csa-Chr4:20643086 Csa06g00156 Csa-Chr6:1019769 5.41E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02044 - - csv:101218157 729.939