Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02049 ATGGGGAGAGTTAAATTGCAAATCAAAAGAATTGAAAATACAACAAATCGACAAGTAACTTTTTCAAAACGAAGAAATGGACTCATCAAGAAGGCTTACGAACTCTCTATTCTATGTGATATTGATATTGCTCTTATTATGTTCTCTCCTTCTGGCCGCCTCAGCCAGTTCTCCGGTCGCCGCAGAATTGAGGATGTGCTTGCTCGTTATATAAATCTGCCTGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTATTAGGAACGCTAAATAATTTGAAGACAGAGAATGATATTGCACAACAACTTACCAATCCTACATCAAGCAACTCCAATGTTGAGGAACTTCAGCAAGAGGTTGGTACACTGAGACACGAGCTTCAACTTGCTGAGCAACAACTCAGGTTATTTGAACCTGATTTTCTTTCATTCACATCAAATGGTGAAATAAATTCTTGTGAGAAAAATCTTTTAGACACTTTGGCGAGAATCACCCAAAGGAAGAAAGATCTATTAAGCACTCATTTATCTCCTTATGAACCTCCAAATGGGATTCAGATATATTTGGATCAACAAGATGGAATACCAACCTCTTTTGAAAGCGATGTTGGTCATTGGTTGCCAGAAAGTAATGGACAAAATAATCCAAACCAAATTTGTGTTGCTTCTGAATCATCTTCCATCCCTCAAAGTGGGCAGTATCCAACAGCGACAGTATATGATCAAGTAGTATCACAAGCAGCAGCAGGAACAAACATAAACGTTGGAGTTGGCGTTGGCGTTGGCGTTGGCGGCTATGACATTGCAAATGCCAACGATGACGGTTTCTCCCCATGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCTCAAACTTCTTTTGATGTTGTCAAGAATGAAATTGGGGAGGCTTGTATGAATACAATGGTACCACAACAACAAGTTGATAGCATTTCAAATGGAAACCAAATGCCTCCAAGTGATGGAAGTGCCAATTATGATAATGTCAAGTTGTCTCAACTCAATGTGGATTAA 1053 39.41 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIAQQLTNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDFLSFTSNGEINSCEKNLLDTLARITQRKKDLLSTHLSPYEPPNGIQIYLDQQDGIPTSFESDVGHWLPESNGQNNPNQICVASESSSIPQSGQYPTATVYDQVVSQAAAGTNINVGVGVGVGVGGYDIANANDDGFSPWHHNYTTTQLLSSFIPQTSFDVVKNEIGEACMNTMVPQQQVDSISNGNQMPPSDGSANYDNVKLSQLNVD* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20750323 20753443 - CsaV3_4G030750.1 Csa04g02049 527659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02049 350 MobiDBLite consensus disorder prediction 322 342 - -
Csa04g02049 350 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 316 - -
Csa04g02049 350 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Csa04g02049 350 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Csa04g02049 350 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 316 - -
Csa04g02049 350 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Csa04g02049 350 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 Coils Coil 115 135 - -
Csa04g02049 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02049 - - - csv:101222576 687.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00558 Csa-Chr1:3621937 Csa04g02049 Csa-Chr4:20750323 9.27E-27 dispersed
Csa04g02049 Csa-Chr4:20750323 Csa05g03218 Csa-Chr5:31724175 2.50E-28 dispersed
Csa04g02049 Csa-Chr4:20750323 Csa05g02467 Csa-Chr5:26463781 8.00E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00558 . 1 257 Type I MADS-box Gene Family AT2G03060 51.3 4.0e-64 242.3
Csa04g00001 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Csa04g00001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Csa04g02049 . 1 174 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-51 199.9
Csa01g02690 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Csa01g01622 . 1 166 Type I MADS-box Gene Family AT5G48670 56.1 3.4e-48 189.1
Csa01g00558 . 1 257 Type I MADS-box Gene Family AT2G03060 51.3 4.0e-64 242.3
Csa04g00001 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Csa04g00001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Csa04g02049 . 1 174 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-51 199.9
Csa01g02690 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Csa01g01622 . 1 166 Type I MADS-box Gene Family AT5G48670 56.1 3.4e-48 189.1
Csa01g00558 . 1 257 Type I MADS-box Gene Family AT2G03060 51.3 4.0e-64 242.3
Csa04g00001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Csa01g02690 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Csa01g01622 . 1 166 Type I MADS-box Gene Family AT5G48670 56.1 3.4e-48 189.1
Csa04g00001 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Csa04g02049 . 1 174 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-51 199.9
Csa01g00558 . 1 257 Type I MADS-box Gene Family AT2G03060 51.3 4.0e-64 242.3
Csa04g00001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Csa01g02690 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Csa01g01622 . 1 166 Type I MADS-box Gene Family AT5G48670 56.1 3.4e-48 189.1
Csa04g00001 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Csa04g02049 . 1 174 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-51 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31598 PF00319 SRF-TF 1.10E-25 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02049 Csa_Chr04 FPKM 5.793003 7.074192 8.386611 9.393009 23.106812 22.869951 23.674721 20.799055 20.222591 18.415159