Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02049 ATGGGGAGAGTTAAATTGCAAATCAAAAGAATTGAAAATACAACAAATCGACAAGTAACTTTTTCAAAACGAAGAAATGGACTCATCAAGAAGGCTTACGAACTCTCTATTCTATGTGATATTGATATTGCTCTTATTATGTTCTCTCCTTCTGGCCGCCTCAGCCAGTTCTCCGGTCGCCGCAGAATTGAGGATGTGCTTGCTCGTTATATAAATCTGCCTGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTATTAGGAACGCTAAATAATTTGAAGACAGAGAATGATATTGCACAACAACTTACCAATCCTACATCAAGCAACTCCAATGTTGAGGAACTTCAGCAAGAGGTTGGTACACTGAGACACGAGCTTCAACTTGCTGAGCAACAACTCAGGTTATTTGAACCTGATTTTCTTTCATTCACATCAAATGGTGAAATAAATTCTTGTGAGAAAAATCTTTTAGACACTTTGGCGAGAATCACCCAAAGGAAGAAAGATCTATTAAGCACTCATTTATCTCCTTATGAACCTCCAAATGGGATTCAGATATATTTGGATCAACAAGATGGAATACCAACCTCTTTTGAAAGCGATGTTGGTCATTGGTTGCCAGAAAGTAATGGACAAAATAATCCAAACCAAATTTGTGTTGCTTCTGAATCATCTTCCATCCCTCAAAGTGGGCAGTATCCAACAGCGACAGTATATGATCAAGTAGTATCACAAGCAGCAGCAGGAACAAACATAAACGTTGGAGTTGGCGTTGGCGTTGGCGTTGGCGGCTATGACATTGCAAATGCCAACGATGACGGTTTCTCCCCATGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCTCAAACTTCTTTTGATGTTGTCAAGAATGAAATTGGGGAGGCTTGTATGAATACAATGGTACCACAACAACAAGTTGATAGCATTTCAAATGGAAACCAAATGCCTCCAAGTGATGGAAGTGCCAATTATGATAATGTCAAGTTGTCTCAACTCAATGTGGATTAA 1053 39.41 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIAQQLTNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDFLSFTSNGEINSCEKNLLDTLARITQRKKDLLSTHLSPYEPPNGIQIYLDQQDGIPTSFESDVGHWLPESNGQNNPNQICVASESSSIPQSGQYPTATVYDQVVSQAAAGTNINVGVGVGVGVGGYDIANANDDGFSPWHHNYTTTQLLSSFIPQTSFDVVKNEIGEACMNTMVPQQQVDSISNGNQMPPSDGSANYDNVKLSQLNVD* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20750323 20753443 - CsaV3_4G030750.1 Csa04g02049 527659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02049 350 MobiDBLite consensus disorder prediction 322 342 - -
Csa04g02049 350 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 316 - -
Csa04g02049 350 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Csa04g02049 350 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Csa04g02049 350 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 316 - -
Csa04g02049 350 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Csa04g02049 350 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa04g02049 350 Coils Coil 115 135 - -
Csa04g02049 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00558 Csa-Chr1:3621937 Csa04g02049 Csa-Chr4:20750323 9.27E-27 dispersed
Csa04g02049 Csa-Chr4:20750323 Csa05g03218 Csa-Chr5:31724175 2.50E-28 dispersed
Csa04g02049 Csa-Chr4:20750323 Csa05g02467 Csa-Chr5:26463781 8.00E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31598 PF00319 SRF-TF 1.10E-25 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02049 - - csv:101222576 687.952