Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02100 ATGTTTAGCAACACATCGAAAGGAGAAAACGATTGTCACGGTGGAGGAATGAGCATAAACGCACACAACTTGATAAAGAACCCACCGGATTCGCTAAGAAGAATCGATCAAATCTCAAAAAACGGCGTGAGTTCTCAAACGAACAACTCAGAGACGATTGGGAATATGACAACAAACATGAAGAACAACAACCAAAATAACAGCAGCAGCAACAACAACAGTAATAGTAGTTTCATGGGGGGAAAGGGTGGGGGAGGAAATAATAATTACCGTTGCGACAGCATGGAGACGCCAGGGATGGTGATAAAGCCGCACACGGGGGGAGACGTGAGGTGGGATGCGGTAAACATGGTGTCGAAAGGAGGGGCGTTGAATTTGAGTAATTTTCAGCTGTTGAAGAGGCTTGGATATGGAGACATTGGGAGTGTATACTTGGTGGAATTGAGAGGGACAGATACGTTTTTTGCTATGAAAGTGATGGATAAAGCTTCATTGGCGAGTAGGAATAAGTTATTGAGGGCACAAACAGAAAGGGAAATATTAGGGTTATTGGATCATCCATTTTTGCCAACACTTTATTCTTATTTTGAAACTGATAAGTTTTACTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCACTCTCTTCGTCAAAAGCAACCTAATAAATATTTTACAGAAGAAGCTGCCAGGTTCTATGCATCAGAGGTTCTATTAGCGTTAGAATACCTTCACATGTTAGGTATAGTCTATAGGGATTTGAAACCTGAAAATCTCTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGACCTCTCTCTCCGCTGCTCCGTCAGTCCCACCCTCGTTAAATCCTCCTCCGTCAACGTAAACACCTCCTCCACCAACGCCAACGCCACCTCCAACGCTGGACTATCCGGCGCCGGCATCCTCGACGACGAATTCGTCGTCCACGGCTGTATGCAACCTTCCAATTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAATCGAAAATCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCTCCCTCCCCGAACTCATGGCCGAACCTACCAACGTCAGATCCATGTCCTTCGTCGGCACACACGAGTATCTCGCTCCGGAGATCATCCAAGGTGAAGGTCACGGAAGCGCCGTCGACTGGTGGACCTTCGGGATCTTCCTCTACGAGCTTCTTCACGGAACTACTCCATTCAAAGGATCTGGAAACAGAGCTACTCTGTTCAATGTCGTGGAGCAACCGCTTAGATTCCCTGAGGCGCCGCAAGTTAGTCTAGCTGCTCGGGATCTGATCAGAGGACTTCTTATTAAGGAGCCGCAAAAGAGAATCGCGTACCGGAGAGGTGCAACGGAGATTAAACAGCATCCGTTCTTCGATGGAGTGAATTGGGCGTTGGTTAGAAGTGCTATGCCGCCGCATGTCCCGGAACCGGTGGATTTCACGCAGTTTGCTAGAAAGAGGAGCGGGACCGGAGCGGTAGAAGATAAGAGAGCGGTGGAAGTAGCAGCAGCAGCAGCAGCGGCAACGTCAACGGTTGCGGCGGGGAGAATTGTTCGGGTTCTACTGGGAGTGATCCCAATTATGTGGATTTTGAGTACTTCTAGGGCACAAAAGTGA 1650 48.18 MFSNTSKGENDCHGGGMSINAHNLIKNPPDSLRRIDQISKNGVSSQTNNSETIGNMTTNMKNNNQNNSSSNNNSNSSFMGGKGGGGNNNYRCDSMETPGMVIKPHTGGDVRWDAVNMVSKGGALNLSNFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNTSSTNANATSNAGLSGAGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPEAPQVSLAARDLIRGLLIKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFTQFARKRSGTGAVEDKRAVEVAAAAAAATSTVAAGRIVRVLLGVIPIMWILSTSRAQK* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21546349 21549279 + CsaV3_4G031260.1 Csa04g02100 527710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02100 549 SUPERFAMILY Protein kinase-like (PK-like) 126 497 IPR011009 -
Csa04g02100 549 ProSiteProfiles Protein kinase domain profile. 129 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02100 549 MobiDBLite consensus disorder prediction 1 92 - -
Csa04g02100 549 Gene3D Transferase(Phosphotransferase) domain 1 342 487 - -
Csa04g02100 549 PANTHER FLIPPASE KINASE 1-RELATED 41 502 - -
Csa04g02100 549 Gene3D Phosphorylase Kinase; domain 1 127 212 - -
Csa04g02100 549 MobiDBLite consensus disorder prediction 37 83 - -
Csa04g02100 549 CDD STKc_phototropin_like 127 490 - -
Csa04g02100 549 Gene3D Transferase(Phosphotransferase) domain 1 213 282 - -
Csa04g02100 549 SMART serkin_6 129 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02100 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Csa04g02100 549 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 41 502 - -
Csa04g02100 549 Pfam Protein kinase domain 315 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02100 549 Pfam Protein kinase domain 130 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02100 Csa-Chr4:21546349 Csa06g02664 Csa-Chr6:23445828 3.67E-167 dispersed
Csa04g02100 Csa-Chr4:21546349 Csa01g01551 Csa-Chr1:11109475 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78183 PF00069 Pkinase 3.00E-22 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02100 - - csv:101204230 1009.98