Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02101 ATGGGAGACGGCAATAACTCCAACAGAGGCCTTGTCTCCGCCAACGCCGCCAACCGGAACAACAACAACAATAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATCGGGAAGATCGGCGAGGGAACCTATGGCCTCGTGTTCCTTGCCAAAATCAAACCCCCTTCACCTAGTCGCGGCAAGTCAATTGCTATAAAAAAATTCAAGCAATCCAAGGACGGTGATGGGGTCTCCCCAACTGCCATTCGAGAAATTATGCTACTGCGGGAAATTTCACACGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGTTGTATCTAGCTTTTGATTATGCTGAACATGATCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTATACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAATTATCTCCACAGTAATTGGATTATTCACCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGGGAAGAGCAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATTTGAAAATGGAGTGGTTGTCACCATTTGGTATAGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTACACTAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGCCTCCGAATCCTTTCCAGCTTGATCAACTGGACAAGATTTTTAAGGTTTTAGGCCATCCCACGATTGAGAAATGGCCAACACTGGCTAATCTTCCAAATTGGCAACAAGATGTACAGCACATTCAGGGGCATAAATATGACAATGCTGGATTATATAATGTTGTACACCTGTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACGGCAGCCCAAGCCCTAGAGCATGAGTACTTTCGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTACCAAACCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTCGACACAACCACAGATTTCGAGGGAACAACCAGCCTTCAACCTTCACAAACGGTAACATCTGGAAATGCTGTAAACATGCAAGGTGGTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTCGGCATGCCGAGGATGCCGCATCAGAGCATGGCTGCCTATAATCTTGCTTCCCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTTTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGCCAGGTTATCCTCCCCAGCAGAAACAACAAAGACGTTACTGA 1455 45.77 MGDGNNSNRGLVSANAANRNNNNNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLFENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGPPNPFQLDQLDKIFKVLGHPTIEKWPTLANLPNWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPNQPGEKVINYPTRPVDTTTDFEGTTSLQPSQTVTSGNAVNMQGGHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMPGYPPQQKQQRRY* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21560346 21575574 - CsaV3_4G031270.1 Csa04g02101 527711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02101 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Csa04g02101 484 PANTHER CELL DIVISION PROTEIN KINASE 26 478 - -
Csa04g02101 484 Gene3D Transferase(Phosphotransferase) domain 1 121 360 - -
Csa04g02101 484 MobiDBLite consensus disorder prediction 444 484 - -
Csa04g02101 484 ProSiteProfiles Protein kinase domain profile. 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02101 484 MobiDBLite consensus disorder prediction 448 462 - -
Csa04g02101 484 SMART serkin_6 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02101 484 MobiDBLite consensus disorder prediction 384 404 - -
Csa04g02101 484 ProSitePatterns Protein kinases ATP-binding region signature. 44 72 IPR017441 GO:0005524
Csa04g02101 484 SUPERFAMILY Protein kinase-like (PK-like) 33 350 IPR011009 -
Csa04g02101 484 MobiDBLite consensus disorder prediction 1 31 - -
Csa04g02101 484 Pfam Protein kinase domain 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02101 484 Gene3D Phosphorylase Kinase; domain 1 21 120 - -
Csa04g02101 484 CDD STKc_CDK8_like 37 349 - -
Csa04g02101 484 PANTHER CYCLIN-DEPENDENT KINASE E-1 26 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02101 Csa-Chr4:21560346 Csa05g02229 Csa-Chr5:25043667 3.80E-78 dispersed
Csa04g02101 Csa-Chr4:21560346 Csa02g01815 Csa-Chr2:17434982 2.25E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78184 PF00069 Pkinase 2.20E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02101 K02208 - csv:101203984 946.421