Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02111 ATGGGAGACCCATGTTCCAACTCATTAGCAAGTGTTCTAAAATTCAACTCCCACTTCTCCCCATCACAACCTTCAAATTCCATCCTACACCTCAACAACATGTCTCACAATTGCTTCTCTTACCCCTACCCAACCCCGACACCTCCTCCGCCTTCATCTCCTCCTCTCCGAGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCGCCCGAGCAGCGACAGGAGCAAGAAGAAGAAGACGATGAAGATGGCGGGGATAGGAGAGGCAGCAACTACGAGGAGGAGGAGTCAGTGACGGTGGCTTTGCACATAGGGCTACCAAGCCCTAGCGCAGCAGAGATAGCATCTTTGATGTGTGGTTCTTCAACTGAAATTAATCATGTTGGTGATGGAGATCATAGCAATAATAGTAACAATAGTATTCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCTCAAATTCTTATTGGTCCTACCCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCATGGGTCACAGTATAGAAAAGGCCCCGAATCCCTCCGAGGCACACAGCCAACAGGCATGCTACGGCTTCCTTGCTACTGCTGTGCACCGGGCTGCCGCAACAACATAGACCACCCACGAGCCAAGCCATTGAAAGACTTCAGAACCCTGCAAACGCATTACAAGCGCAAGCACGGTTTGAAGCCCTTCATGTGTCGAAAGTGCGGGAAGGCGTTCGCTGTGCGTGGAGATTGGCGGACGCACGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGTTCGGATTTCAAACACAAGCGCTCCTTAAAGGACCATGTTAAGGCCTTCGGTAACGATCACGCCGCGTACGGTGGGGGTGGGATCCATGGGTTTGGAGATGAGGAAGATGAGCCTGCTTCTGAAGTAGAGCAGGATAATGATGAGTGA 1008 50.2 MGDPCSNSLASVLKFNSHFSPSQPSNSILHLNNMSHNCFSYPYPTPTPPPPSSPPLREALPLLGLMSPPEQRQEQEEEDDEDGGDRRGSNYEEEESVTVALHIGLPSPSAAEIASLMCGSSTEINHVGDGDHSNNSNNSIQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIHGFGDEEDEPASEVEQDNDE* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21785444 21788122 + CsaV3_4G031370.1 Csa04g02111 527721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02111 335 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
Csa04g02111 335 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 14 334 - -
Csa04g02111 335 SUPERFAMILY beta-beta-alpha zinc fingers 241 276 IPR036236 -
Csa04g02111 335 Gene3D Classic Zinc Finger 171 194 - -
Csa04g02111 335 SUPERFAMILY beta-beta-alpha zinc fingers 168 194 IPR036236 -
Csa04g02111 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 276 IPR013087 -
Csa04g02111 335 MobiDBLite consensus disorder prediction 68 95 - -
Csa04g02111 335 Gene3D Classic Zinc Finger 234 309 - -
Csa04g02111 335 SMART c2h2final6 172 194 IPR013087 -
Csa04g02111 335 SMART c2h2final6 256 276 IPR013087 -
Csa04g02111 335 PANTHER ZINC FINGER PROTEIN WIP2 14 334 IPR043584 GO:0003700|GO:0010468
Csa04g02111 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
Csa04g02111 335 MobiDBLite consensus disorder prediction 314 335 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03608 Csa04g02111 CCT
Csa03g03608 Csa04g02111 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01464 Csa-Chr1:10319081 Csa04g02111 Csa-Chr4:21785444 8.56E-105 dispersed
Csa04g01407 Csa-Chr4:14099785 Csa04g02111 Csa-Chr4:21785444 3.41E-125 dispersed
Csa04g02111 Csa-Chr4:21785444 Csa07g02025 Csa-Chr7:19726107 1.23E-112 dispersed
Csa04g02111 Csa-Chr4:21785444 Csa03g03608 Csa-Chr3:32155979 1.31E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31600 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02111 - - csv:101209947 657.136