Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02122 ATGGCTTCCCCCTTCAAACCCCCATTCTTGCTCTCTTTGGCCTTCGCTTTCTTCATTTTGGGTTATTCTTCATCTGAGGAACCAACCCTTTTGACCTTTAAAGCCTCCATTAAAGATTCAACAAACTCTCTCTCGAATTGGGTTTCTTCTTCTCAGACCCATTTCTGTAATTGGACTGGAATTGCTTGTGTCACCTCCTCTTCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTCTGAACCTTTCTGGGGAAATTTCTTCTTCCATTTGTGAACTCCCTCGTTTGGCTCATCTTAATCTTGCTGACAATCGATTTAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGGTCCTTGGAGACTTTGAATCTGAGTAATAATCTTATTTGGGGGACGATCCCAGATCAGATTTCTCTGTTTAGCTCTTTGCGAGTGCTTGATTTTGGGAAGAATCACGTTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAAGAGTCTACAAATTCTCAATCTTAGAAGCAACTTGATTTCTGGTACAGTGCCTTCTCTTGTTTTTCATAATCTGACTGAACTTCTGGTCGTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGAAATTCCTAGTGAGATTGGGAAGCTTGAGAAACTTGAGGAGTTGTTGCTTCATAGCTCTGGTTTCTATGGTGAAATCCCTTCGTCTTTGTTGGGCTTGAGAAGTTTGAGTGTTTTGGATCTTTCTCAGAACAATCTCACTGGGAAAATCCCCGAAATGTTGGGTTCTTCTTTGAAAAATTTGGTGTATTTTGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAAGCCTTGTGAGTTTTAGTGTTCATACCAATTTTTTCGCAGGAAGTTTGCCTAATTCCTTGAACCAATGCTTGAATCTTGAAAGGTTTCAAGTTCAGAATAATGGGTTTTCTGGGGATTTTCCTGAAGCTTTGTGGTCATTACCTAAGATTAAGCTCATTAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCAGAGTCTATATCAATGGCTGCTCACCTTGAGCAAGTTCAGCTCGACAACAACAGCTTTTCCAGTAAAATACCTTGGGGTCTTGGGTCGATTCGAAGCTTGTATCGATTCTCTGTTTCGCTCAATCGCTTTTATGGTGAATTGCCACCAAACTTCTGTGATTCGCCATTAATGAGTATAATTAATTTATCACATAATTCTCTTTCTGGTCGAATTCCCGAGCCGAAAAACTGCAAGAAACTGGTCTCTTTGTCCTTAGCTGGCAATAGTCTTACTGGAGGAATTCCCACTTCCCTTGCAAATCTACCTGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCAATTCCTCAAGGACTCGAAAACTTAAAGCTTGCCCTCTTTAATGTTTCGTTCAATCGATTATCGGGCTCTGTTCCATTCTCTTTGATTTCGGGGTTACCAGCTTCATTTCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTCCTCATGGCCATCCAACAAACCATATGTATGGACTTAACAAAATGACATGTGCTCTCATCTCTCTAGCTTGTGTTTTAGGAGTTCTGAGTTTAGCTGCTGGGTTCATTTTGTATTATCGATCCTACAGACCGAAGTCCAGACTCGATAACTGGCATTCGGTCTACTTCTATCCTCTTAGAATCAGTGAGCATGAGTTGGTCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGAGGAGCTTTTGGCCAAGTATTCATTTTAAGCTTACCAAGCCGTGAACTGATCGCTGTAAAGAAACTCATTAATTTTGGGAGACGTTCGTGGAAGTCGTTGAAAGCTGAGATCAAGACATTGGCCAAGATTAGACACAAAAATATCATCAAAATTCTGGGGTTTTGCCATTCTGATGATGCCATTTTTCTGATTTACGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGATTCATGTCTGAATTGGAATGTGAGATTGAGAATTGCCATTGAGGTTGCTCAAGGACTAGCGTACATTCACAAAGACTATGTCCCACATTTACTTCATCGAAACGTCAAGTCGTCGAACATTCTACTGGACGCCGACTTTGTCCCAAAACTCACTGATTTTGCTCTTCACCATATTGTTGGAGAGTCGGCATTTCACTCGACAGTAGCTTCGGAATCTTCTCACTCCTGCTATATTGCACCGGAATATAAATACAACAAAAAAGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTAGAACTCTTGACTGGTAGACAAGCCGAGCGATCGGAATCAACAGAGGACTCTCTTGATGTCGTTCAGTGGGTGAGAAGGAAGGTGAACATAACCAATGGAGCTTCCCAAGTCCTGGACCCGAGTGTCTCAGAACATTGTCAACAACAGATGCTGGAGGCTCTAGACATTGCTCTCCAATGCACTTCTTTGATGCCTGAAAAACGACCTTCGATGCTCGAAGTCGCCAAGGCCCTTCAACTGATTGGCTCGACAACAAACCTTCAGGATGCAACCTTCTTGGGTGCAGAGGATAGTTCGGTTTCAAGCTGA 2670 42.13 MASPFKPPFLLSLAFAFFILGYSSSEEPTLLTFKASIKDSTNSLSNWVSSSQTHFCNWTGIACVTSSSPSLLSVSAIDLQGLNLSGEISSSICELPRLAHLNLADNRFNQPIPLHLSQCRSLETLNLSNNLIWGTIPDQISLFSSLRVLDFGKNHVEGKIPEGIGALKSLQILNLRSNLISGTVPSLVFHNLTELLVVDLSENSYLLSEIPSEIGKLEKLEELLLHSSGFYGEIPSSLLGLRSLSVLDLSQNNLTGKIPEMLGSSLKNLVYFDVSENKLVGSFPNGFCSGKSLVSFSVHTNFFAGSLPNSLNQCLNLERFQVQNNGFSGDFPEALWSLPKIKLIRAENNGFSGEIPESISMAAHLEQVQLDNNSFSSKIPWGLGSIRSLYRFSVSLNRFYGELPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSLTGGIPTSLANLPVLTYLDLSDNNLTGSIPQGLENLKLALFNVSFNRLSGSVPFSLISGLPASFLQGNPDLCGPGLQTPCPHGHPTNHMYGLNKMTCALISLACVLGVLSLAAGFILYYRSYRPKSRLDNWHSVYFYPLRISEHELVMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLINFGRRSWKSLKAEIKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLAYIHKDYVPHLLHRNVKSSNILLDADFVPKLTDFALHHIVGESAFHSTVASESSHSCYIAPEYKYNKKATEQMDVYSFGVVLLELLTGRQAERSESTEDSLDVVQWVRRKVNITNGASQVLDPSVSEHCQQQMLEALDIALQCTSLMPEKRPSMLEVAKALQLIGSTTNLQDATFLGAEDSSVSS* 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21951952 21955190 + CsaV3_4G031480.1 Csa04g02122 527732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02122 889 Gene3D Ribonuclease Inhibitor 23 188 IPR032675 -
Csa04g02122 889 ProSiteProfiles Protein kinase domain profile. 596 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02122 889 Pfam Protein kinase domain 605 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02122 889 PRINTS Leucine-rich repeat signature 244 257 - -
Csa04g02122 889 PRINTS Leucine-rich repeat signature 457 470 - -
Csa04g02122 889 PANTHER OSJNBB0022F23.6 PROTEIN 7 876 - -
Csa04g02122 889 SUPERFAMILY Protein kinase-like (PK-like) 605 871 IPR011009 -
Csa04g02122 889 Gene3D Ribonuclease Inhibitor 189 265 IPR032675 -
Csa04g02122 889 Gene3D Phosphorylase Kinase; domain 1 603 672 - -
Csa04g02122 889 Gene3D Transferase(Phosphotransferase) domain 1 673 882 - -
Csa04g02122 889 SUPERFAMILY L domain-like 25 303 - -
Csa04g02122 889 ProSiteProfiles Leucine-rich repeat profile. 459 482 IPR001611 GO:0005515
Csa04g02122 889 SMART LRR_typ_2 241 265 IPR003591 -
Csa04g02122 889 SMART LRR_typ_2 457 481 IPR003591 -
Csa04g02122 889 SMART LRR_typ_2 266 290 IPR003591 -
Csa04g02122 889 SMART LRR_typ_2 167 191 IPR003591 -
Csa04g02122 889 SMART LRR_typ_2 120 143 IPR003591 -
Csa04g02122 889 SMART LRR_typ_2 192 217 IPR003591 -
Csa04g02122 889 SMART LRR_typ_2 95 119 IPR003591 -
Csa04g02122 889 SUPERFAMILY L domain-like 205 526 - -
Csa04g02122 889 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Csa04g02122 889 Pfam Leucine rich repeat 435 493 IPR001611 GO:0005515
Csa04g02122 889 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Csa04g02122 889 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515
Csa04g02122 889 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 876 - -
Csa04g02122 889 Gene3D Ribonuclease Inhibitor 266 528 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02122 Csa-Chr4:21951952 Csa03g02633 Csa-Chr3:24824322 1.09E-28 dispersed
Csa04g02122 Csa-Chr4:21951952 Csa06g03068 Csa-Chr6:26350693 6.10E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78186 PF00069 Pkinase 5.20E-39 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02122 - - csv:101222175 1714.12