Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02134 ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGATGTAGCACAGAATCTCAAGAAATTGGTTAATGAACAGGACTGCCCTCATTTGCTCTTTTATGGCCCCTCCGGTTCTGGGAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTTGGACCCAGTGCGGATAAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAACCAGAACTATTGATATAGAGTTGACAACCTTGTCAAGTGCCAACCATGTGGAGCTCACTCCTAGTGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGATTCCAAAGGGAAAAGAGGACATAAAGTTTTGGTTCTAAATGATGTTGATAAACTATCAAGAGAAGCTCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGCTCTCGCTGCCTAAATGTGCGGATAAATGGACCTACAGAGGAGCAGATTTTCAAGGTTTTAGAGTACATTGGAAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACAGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTTGTCAGCAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGAAATAATGAAGGAGCAGAGTCCCAAAAGATTATTCCAGGTCCGTGGGAAGTTATATGAGTTACTGGTTAATTGTATCCCTCCGGAGATCATATTGAAGAGATTGCTTTATGAGTTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGTCTTGGACAGAAAGCCATCTTCCACATAGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAA 1065 41.78 MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22088303 22094570 - CsaV3_4G031600.1 Csa04g02134 527744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02134 354 SMART AAA_5 33 192 IPR003593 -
Csa04g02134 354 CDD AAA 19 181 - -
Csa04g02134 354 Gene3D - 252 345 - -
Csa04g02134 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 346 - -
Csa04g02134 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
Csa04g02134 354 Gene3D - 190 248 - -
Csa04g02134 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Csa04g02134 354 Pfam DNA polymerase III, delta subunit 18 187 - -
Csa04g02134 354 Gene3D - 1 189 IPR027417 -
Csa04g02134 354 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02134 Csa-Chr4:22088303 Csa06g03254 Csa-Chr6:27413046 1.57E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02134 K10756 - csv:101221072 686.411