Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02189 ATGGCATCAACTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGCGAAGCTGATGATGGAATAGTTGTCCGAGAAGTCTGTGCAAATGGGATCAGCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATTCAAGAGGCCGAATCTTCATTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAATGTCGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGCATTGCTGATAAGACACCTCCAAAAAAAGGACGTTCGCGCTCTGAATCTCAACATGCAGTTTCACAGCATGCTGCAAACCTGGTTCTTGAAGCCATATATTTGAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGACAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTTCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAACAATGAAAGCTGTGCTAGGATCCAAAAAGGATTTGCTGTGTTCTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCCATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATATGCTCTATCCTTATGCAGTCAGACTTCTGTTTTAGCAAAACAACTTGAAGAGGTTATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTAGCTCTTTGTTATTGTGCAGCAGGACAGAATAAAATCGCCTTAAATCTTCTGAGAAAATCTCTACACAAACACGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCTGCTGAAGGTGTTGGTTATGCCCAGCGGGCATTGAGCAATTGTATAGAAAACGAAGAGCATTTAAAGGGTGTAGGTCTTCGCTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGTCTTCCTCAGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCGTTGAAATCTCTTGAGGCAGCAAGTGGACTGGAGAGCAACAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAGTATCGGAATTTGAATGCTGCTCTGCAATATGCAAAGAAGTTTATTGATGAAACCGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAGAAGAGATTTTCTGAGGCTGAAGTGGTCACCGATGCTGCAATGGATGAAACCACAAAATGGGAACAAGGACCACTTCTCAGACTTAAGGCAAAGCTGAAGGTCTCCCAATCATTACATATGGATGCTATTGAAACTTACCGCTATCTCCTTGCATTAGTTCAAGCACAAAAGAAATCATTTGGGCCTCTTCGGATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAGTTTGAAGTGTGGAATGGTCTAGCCAATTTGTACTCCAGCCTTTCACATTGGAAAGATGCGGAGATATGCCTAGGAAAAGCAAGAGAGCTGAAAGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTGATGTGTGAAGGACGTGTCAAAATACAAGAAGCTCTAGCTGCTTATATCAACGCTCTCCTACTCGAACCAACTTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAGGCTGGCCCAGATGCATTGCCTATAGCAAGAAGCTTACTTTCAGACGCATTGAGATTGGATCCTACCAACCGTAAGGCTTGGTTTTACTTGGGGGTCATTCATCGGGACGAAGGACGAATGGCTGATGCTATAGACTGTTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTGTTCTCTAG 2127 43.91 MASTVDEDDREPAMESGEADDGIVVREVCANGISIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCIADKTPPKKGRSRSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNESCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGKIKWDPSVMEHLIYALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKIALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRALSNCIENEEHLKGVGLRLLGLCLGKQAKMSSSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGRVKIQEALAAYINALLLEPTYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSVL* 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22664714 22671903 - CsaV3_4G032150.1 Csa04g02189 527799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02189 708 Pfam Tetratricopeptide repeat 651 693 - -
Csa04g02189 708 Gene3D Tetratricopeptide repeat domain 648 704 IPR011990 GO:0005515
Csa04g02189 708 PANTHER PROTEIN NPG1 14 707 IPR043376 -
Csa04g02189 708 MobiDBLite consensus disorder prediction 1 21 - -
Csa04g02189 708 PANTHER CALMODULIN-BINDING PROTEIN 14 707 - -
Csa04g02189 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515
Csa04g02189 708 SUPERFAMILY TPR-like 134 465 IPR011990 GO:0005515
Csa04g02189 708 SMART tpr_5 666 699 IPR019734 GO:0005515
Csa04g02189 708 SMART tpr_5 316 349 IPR019734 GO:0005515
Csa04g02189 708 SMART tpr_5 596 629 IPR019734 GO:0005515
Csa04g02189 708 SMART tpr_5 562 595 IPR019734 GO:0005515
Csa04g02189 708 SMART tpr_5 472 505 IPR019734 GO:0005515
Csa04g02189 708 Gene3D Tetratricopeptide repeat domain 243 544 IPR011990 GO:0005515
Csa04g02189 708 Gene3D Tetratricopeptide repeat domain 40 238 IPR011990 GO:0005515
Csa04g02189 708 Gene3D Tetratricopeptide repeat domain 548 647 IPR011990 GO:0005515
Csa04g02189 708 SUPERFAMILY TPR-like 436 697 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01189 Csa-Chr3:9205046 Csa04g02189 Csa-Chr4:22664714 0 dispersed
Csa04g02189 Csa-Chr4:22664714 Csa03g02608 Csa-Chr3:24633203 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02189 K21843 - csv:101206641 1375.53