Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02196 ATGCTTTCAGAATTCATTACCAATTATTCCTCTCCACTTCCCCATCAATTTCTGCTCTCCTTCGCTCTCTCTGACTTTGCATTTCTTTATTATATATCTTTCCGCGTTCCCAGTTCGTGTTTTCCCCAACTCTCTCTCTCTCTCTCTGGTTCTTCAAGATTCTTGCTGACTTTGTCGATGCAGACTGATGATTATGGAGCAGATAAAATACTTCCTCCTTCAGATCTTTGTAGTTTTAGCCATTTCATTTCTTGTTTCTGCACAGGATCAATCAGGGATTTGTCAAACAATAACTTGAGTGGACCAGTGCCCGATTCTCTATCCAAATTGCAGTCCTTGAAAGTTCTAGATTTGAGAGACAATCCACTCCTTGGTTCTATACCAAGCGAACTCGTGGAAAGATCGAAGAACGGATCCCTTTCAATAAGGGTTGGAGCCGGAGGAAACACGGATCTTTGTGCTTCATCTTCTTGTCCAAAGAAGAAAAAGAGTTATGTTATTATGATTGTAGCGATAGTTTCATCGTTTCTTGTCCTCTTAGCTGCAACATCAGTCTTGATAATATTGTGGAGAAAAAGAGCTCGGAAACAGCCCGTCATAAGACTCGGAACACTAGAGGAAAAAAAACAGCAACTATCTTACTCTGAAATACGACGTATAACAAACAACTTTGAGAGACAAATTGGAGAAGGAGGTTTTGCAAAAGTATTCCTTGGTAATTTGGATGATAGTCAAGTCGCCGTGAAGGTCCTTAAGTCTTCGGTTCAAGGTTATAAAGAATTTGAAGCAGAGGTTAAACTTTTGTTGAGAATTCATCATCGAAACTTGACCAGCCTTGTTGGATACTGCTGCCAAAAAACCAACCTGGTTCTAATTTATGAGTACATAAACAATGGCAACTTAAAAGAGCATCTATCAGGTAGCAAAGGCAGTGTTCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATTCAGCTCAAGGGTTGGAGTATCTGCATCATGGTTGTAGGCCACCGATTGTTCATAGAGATGTGAAATCTGCAAACATCCTTTTGAATGAAAGATTCCAAGCTAAAATAGCTGATTTTGGTCTATCCAAGAGTTTTCCAACCGAAAGCCGTACTCATATGACAACCGTTGTTGCGGGGACCGATGGTTATCTCGATCCCGAGTATTATGCAACTGGCTGGTTGACTGAGAAAAGTGATGTTTATAGTTTTGGAGTTCTTGTATTGGAAATCGTTACTTCTCGTCCAGTCCTGATGATCGACAGAGCTTCTTCACAGAAATATCATATAAGCCAATGGGTTATGCAATTGATGAAAATAGGTGATATAAGGAGCATTGTTGATCAAAAGGTGAGGGAAAACTTTGACTTGAGTTCTGCTTGGAAGGCAGTGGAGATTGCAATGAAATGTTTGTCATTGAATTCCATTGATAGGCCAAACATGAAAGAGGTAGTTTCGGAGTTGAGCGAGTGTTTGGCGTTAGAGAAAGCTCGGAAAAGAAAAAACGCTGACACTGACATGAGAAAATCAAATCCAGTCTCTGCTGGGTCGCCATTTGACTCTCTCACACACACCAGCAGTGAACTATCTTTGGCGACGAACATGTCTGGAGCAAGAGAAGATGAAGATGAAGAACAAACTCGTCAGAGGAAGCTTGAAGAAGCCCTCGAAGTCAAATCGCTCCGCCGGATTGTCAGTGCATATCTCAACTATCCAGAGGCTTCAGAAGAAGACGTGAAAAGATATGAAAGATCGTTCAGTAAGCTTCCTCCTGCTCATAAGGCTCTATTATCACACTTTCCCTTGAAGTTTGAGAGACTAAGAAGGTGTATTTCCACGAATTCATATTTCATCTTTAACATGCTTCAGGCATTTGAACCTCCACTTGATATGAGCCAAGACACTGATTGTTGTGATGGTTCATATCCTGATCATGCCCATGATGATCAATTTTGTTGTAGAGGAGAAAGAAATGCCAACGGTAATTTATGTTCTCGGGAGAGCAATGTATGTTCTGGTGAGCCAACTTCAACAAGTGGAAGAATGTGTTCTTTAGAATCCAAACAAATCTGCTGTCCTGAAGGTGCAAGTGACTCGCCTAAGGCATCAACTATCAACCAGGAAGTCGAAAATGGTGTTAACCATGACCAACATTTGGAAGAGAAGGAAGTCACAGATAAACACAGTGGACACTGTGCTTCTGATTGCAATGGAAATGACTGTTCATCATCTCATGAATGGCTGGACCCATCTCTACAGTTGAATGTTCCATTGGTTGATGTGGATAAGGTGCGTTGTATTATAAGGAACATAGTCAGGGATTGGGCTGAAGAGGGTCAAAAAGAGCGTGAGCAGTGCTATAAGCCTATCCTTGAAGAACTACATTCCCTTTTTCCAGATCGCAAAAAAGAGAGTCCGCCTGCTTGTTTAGTCCCTGGAGCTGGACTTGGACGACTGGCTCTGGAGATTTCATGTTTAGGTTTTATAAGTCAGGGGAACGAGTTTTCATACTACATGATGATATGCTCAAGTTTTATTCTTAATCATACCCAGAAGGTTGGTGAATGGACAATATATCCCTGGATCCACAGCAATAGCAACTCACTTTCAGATAGCGATCAACTTCGTCCTGTTTCAATACCAGATATCCATCCTGCAAGTGCAGGGATTACCGAAGGTTTCTCAATGTGTGGTGGCGATTTTGTTGAAGTATATAGCGATCCAAGTCAAGTAGGACTATGGGATGCGGTTGTGACTTGTTTTTTCATTGATACTGCTCATAATATTATTGAATATATAGAGGTCATATCCAAAATTTTGAAAGATGGCGGAGTGTGGATAAATCTAGGGCCTCTGCTATACCATTTTGCCGATATGTATGGTCAAGAAGATGAAATGTCCATTGAACCAAGTCTAGAAGATGTGAAGAAAATTATATTGCATTACGGCTTTGTGTTTGAGAAGGAAAGGACAGTTGAGACGACATACACAACAAATCCTAGATCGATGATGCAAAATCGATATTATGCTGCTTTCTGGACTATGAGAAAAAAATCAGCTACAGAGGATATGACACATTAA 3090 40.87 MLSEFITNYSSPLPHQFLLSFALSDFAFLYYISFRVPSSCFPQLSLSLSGSSRFLLTLSMQTDDYGADKILPPSDLCSFSHFISCFCTGSIRDLSNNNLSGPVPDSLSKLQSLKVLDLRDNPLLGSIPSELVERSKNGSLSIRVGAGGNTDLCASSSCPKKKKSYVIMIVAIVSSFLVLLAATSVLIILWRKRARKQPVIRLGTLEEKKQQLSYSEIRRITNNFERQIGEGGFAKVFLGNLDDSQVAVKVLKSSVQGYKEFEAEVKLLLRIHHRNLTSLVGYCCQKTNLVLIYEYINNGNLKEHLSGSKGSVLSWEERMQVAVNSAQGLEYLHHGCRPPIVHRDVKSANILLNERFQAKIADFGLSKSFPTESRTHMTTVVAGTDGYLDPEYYATGWLTEKSDVYSFGVLVLEIVTSRPVLMIDRASSQKYHISQWVMQLMKIGDIRSIVDQKVRENFDLSSAWKAVEIAMKCLSLNSIDRPNMKEVVSELSECLALEKARKRKNADTDMRKSNPVSAGSPFDSLTHTSSELSLATNMSGAREDEDEEQTRQRKLEEALEVKSLRRIVSAYLNYPEASEEDVKRYERSFSKLPPAHKALLSHFPLKFERLRRCISTNSYFIFNMLQAFEPPLDMSQDTDCCDGSYPDHAHDDQFCCRGERNANGNLCSRESNVCSGEPTSTSGRMCSLESKQICCPEGASDSPKASTINQEVENGVNHDQHLEEKEVTDKHSGHCASDCNGNDCSSSHEWLDPSLQLNVPLVDVDKVRCIIRNIVRDWAEEGQKEREQCYKPILEELHSLFPDRKKESPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHTQKVGEWTIYPWIHSNSNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGLWDAVVTCFFIDTAHNIIEYIEVISKILKDGGVWINLGPLLYHFADMYGQEDEMSIEPSLEDVKKIILHYGFVFEKERTVETTYTTNPRSMMQNRYYAAFWTMRKKSATEDMTH* 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22755565 22777204 + CsaV3_4G032220.1 Csa04g02196 527806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02196 1029 Gene3D Ribonuclease Inhibitor 46 143 IPR032675 -
Csa04g02196 1029 SMART N2227_2 753 1022 IPR012901 GO:0008757
Csa04g02196 1029 Pfam Carnosine N-methyltransferase 756 1021 IPR012901 GO:0008757
Csa04g02196 1029 Gene3D Transferase(Phosphotransferase) domain 1 296 518 - -
Csa04g02196 1029 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 771 1016 IPR029063 -
Csa04g02196 1029 SUPERFAMILY L domain-like 93 131 - -
Csa04g02196 1029 Pfam Protein tyrosine and serine/threonine kinase 224 491 IPR001245 GO:0004672|GO:0006468
Csa04g02196 1029 SUPERFAMILY Protein kinase-like (PK-like) 206 491 IPR011009 -
Csa04g02196 1029 MobiDBLite consensus disorder prediction 502 553 - -
Csa04g02196 1029 PANTHER CARNOSINE N-METHYLTRANSFERASE 550 1021 - -
Csa04g02196 1029 Gene3D Phosphorylase Kinase; domain 1 186 295 - -
Csa04g02196 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672|GO:0006468
Csa04g02196 1029 PANTHER UNCHARACTERIZED 550 1021 IPR012901 GO:0008757
Csa04g02196 1029 ProSitePatterns Protein kinases ATP-binding region signature. 228 249 IPR017441 GO:0005524
Csa04g02196 1029 SMART serkin_6 222 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02196 1029 MobiDBLite consensus disorder prediction 511 537 - -
Csa04g02196 1029 ProSiteProfiles Protein kinase domain profile. 222 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02196 1029 CDD STKc_IRAK 228 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02196 Csa-Chr4:22755565 Csa07g02424 Csa-Chr7:22189679 2.22E-148 dispersed
Csa04g02196 Csa-Chr4:22755565 Csa03g04110 Csa-Chr3:36012252 1.88E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78187 PF07942 N2227 2.40E-112 CL0063 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02196 K19787 - csv:101207614 1006.51