Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02242 ATGTGGTATGCTCCCGATACAATAATAAGTATTGTTTTAGTGTTATTATTATTATTGGGATGGAAATTAGCTGATTGGATTTGGTTCCGCCCCAAGAAATTAGAGAAGCTTTTAAGACAGCAAGGATTCGCCGGAAATTCTTACCGGATTCTCCACGGCGACTTGAAGGAGAGAGCCGCCATGAGAGAAGAAGCAATGTCCAAGCCCATGAACTTCTCCAACCATATTGCTCCACGTGTCATTCCCTCTATCTATCATACCATCCAACGTTATGGCAAGAATTCATTTATGTGGCTTGGTCCCATACCAAGAGTGCACATAATGGACCCTGAACAACTCAAAACTGTGTTCTCATTCTACAATGATTTCCAAAAGCCAACTATGAATCCCTTTACCAAGTTGCTTGTACAAGGAATTGTAAATCTTGATGGAGAAAAATGGGTCAAACACAGAAAGATAATCAACCCTGCATTTCATTTAGAAAAGCTCAAGGATATGGTACCAGCATTCTATCACAGTTGTAACGAGATGGTTAGCAAGTGGGAAAGCATGGTCTCTAAAGAGGGATCTTGTGAGTTAGATGTAATGCCTTATCTAAAAAATATGGCTTCTGATGTGATTTCTCGGACTGCATTTGGGAGCAGCTATGAGAAAGGAAAAAAGATCTTCAAGCTTCAAACTGAACTAACTAATTTTGTGATTCAAACTACCTTAGGGATATATATTCCTGGATGGAGATTTCTACCCACAAAGTTAAACAGAAAAATGAAAGAGATAAGCAAAGAGATAACAACTTTGATATTGGGTATTATGGATGAAAGAGAAAAGTCTATGAAAGCAGGTGAAGCAATACAAACTGATCTATTAAGCATTCTCATGGAATCCAATATGAATGAAATTAAACAACATGGAAACAAAAAAGACATTGGAATGAGCATAGAAGATGTTATTGAAGAATGCAAGCTTTTCTATATTGCTGGCCAAGAAACTACAGCAACATTACTAGTCTGGACGATGATATTGTTGAGTTCATACTCAGAATGGCAAGAGCGTGCAAGAGCAGAAGTCTTTGAGATCTTTGGTAACAAGCAACCAAATTATGATGGTTTAAATAGACTAAAAGTTGTAACTATGATCTTCAATGAGGTCCTCAGGTTATACCCACCAGGGAGTCTGTTTGTTCGCATTGTTAGGAAAGAAACAAGACTTGGAAATTTGACTTTACCAGGAGGAGTAATGTTAGGCTTACCAATTGTTCTTATCCAACGTGACCCTGAGTTATGGGGAGAAGATGCACATGAATTCAATCCAGAGAGATTTTCTGGAGGAGTTTCTAAAGCAACAAAAAATCCAAGTGCTTTTATACCATTTGGATGGGGTCCTAGAATATGCATAGGACAAACCTTTGCTATGATTGAAGCAAAAATGGCATTATCAATGATTCTACAACGTTTCTCATTTGAGCTTTCGCCATCGTACACACACTCTCCCATTGCCAGTTTAACAACACAACCTCAACATGGAGCTCATATCATACTACACAAACTCTAG 1551 38.17 MWYAPDTIISIVLVLLLLLGWKLADWIWFRPKKLEKLLRQQGFAGNSYRILHGDLKERAAMREEAMSKPMNFSNHIAPRVIPSIYHTIQRYGKNSFMWLGPIPRVHIMDPEQLKTVFSFYNDFQKPTMNPFTKLLVQGIVNLDGEKWVKHRKIINPAFHLEKLKDMVPAFYHSCNEMVSKWESMVSKEGSCELDVMPYLKNMASDVISRTAFGSSYEKGKKIFKLQTELTNFVIQTTLGIYIPGWRFLPTKLNRKMKEISKEITTLILGIMDEREKSMKAGEAIQTDLLSILMESNMNEIKQHGNKKDIGMSIEDVIEECKLFYIAGQETTATLLVWTMILLSSYSEWQERARAEVFEIFGNKQPNYDGLNRLKVVTMIFNEVLRLYPPGSLFVRIVRKETRLGNLTLPGGVMLGLPIVLIQRDPELWGEDAHEFNPERFSGGVSKATKNPSAFIPFGWGPRICIGQTFAMIEAKMALSMILQRFSFELSPSYTHSPIASLTTQPQHGAHIILHKL* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23069281 23073033 + CsaV3_4G032670.1 Csa04g02242 527852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02242 516 SUPERFAMILY Cytochrome P450 78 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS P450 superfamily signature 464 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 PANTHER CYTOCHROME 9 512 - -
Csa04g02242 516 PANTHER CYTOCHROME P450 FAMILY MEMBER 9 512 - -
Csa04g02242 516 Gene3D Cytochrome P450 71 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02242 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Csa04g02242 516 Pfam Cytochrome P450 89 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02849 Csa-Chr1:24999782 Csa04g02242 Csa-Chr4:23069281 0 dispersed
Csa01g02967 Csa-Chr1:26019911 Csa04g02242 Csa-Chr4:23069281 9.50E-176 dispersed
Csa03g03836 Csa-Chr3:33752488 Csa04g02242 Csa-Chr4:23069281 0 dispersed
Csa03g03837 Csa-Chr3:33762422 Csa04g02242 Csa-Chr4:23069281 3.03E-23 dispersed
Csa03g04191 Csa-Chr3:36748734 Csa04g02242 Csa-Chr4:23069281 6.40E-130 dispersed
Csa04g02242 Csa-Chr4:23069281 Csa05g02526 Csa-Chr5:26778582 1.79E-135 dispersed
Csa04g02242 Csa-Chr4:23069281 Csa01g01963 Csa-Chr1:16501446 2.13E-133 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02242 - - csv:101222756 1029.62