Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02244 ATGGCTAAACCAGCTGCCTCTCTCTCTTTTCTCCTTCTATTCCTCTCTTTCCTTTCAGGACGAGATTTGCTGGCCCTAAATGCACAGAAAACGTGGTGTATTCCGAAGCCTTCGTCGGATCAAGCGACGTTGTTAGCGAATATCAATTACGCTTGTGCACAAGTAGATTGTAGAATAATGCAGAAAGGATGCCCCTGCTCTTATCCTGATACTTTGATCAACCGTGCGGCCATAGCTATGAGTTTGTATTACCATTCCAAAGGGAAGAATCAATGGAACTGTGATTTTAGAGGATCTGGTCTTATGGTCATCACTGATCCAAGTTATGGGAACTGTATTTACCCTTGA 348 43.39 MAKPAASLSFLLLFLSFLSGRDLLALNAQKTWCIPKPSSDQATLLANINYACAQVDCRIMQKGCPCSYPDTLINRAAIAMSLYYHSKGKNQWNCDFRGSGLMVITDPSYGNCIYP* 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23093386 23094578 - CsaV3_4G032700.1 Csa04g02244 527854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02244 115 Gene3D - 25 112 - -
Csa04g02244 115 PANTHER BETA-1,3 GLUCANASE 7 115 IPR044788 -
Csa04g02244 115 SMART X8_cls 31 114 IPR012946 -
Csa04g02244 115 Pfam X8 domain 31 100 IPR012946 -
Csa04g02244 115 PANTHER MAJOR POLLEN ALLERGEN OLE E 10-LIKE 7 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02244 - - - csv:101223052 227.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02244 Csa-Chr4:23093386 Csa02g01250 Csa-Chr2:12240303 7.25E-20 dispersed
Csa04g02244 Csa-Chr4:23093386 Csa01g02419 Csa-Chr1:21460942 6.00E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g8 . . . . . . . . . . Cma01g01278 . Car01g01093 . Sed04g2513 . Cpe02g00647 Bhi09g03588 Tan01g4237 Cmetu07g0669 . Hepe01g1479 Mch11g0969 . Cla11g01671 Cam11g1737 Cec11g1763 Cco11g1764 Clacu11g1896 Cmu11g1707 Cre11g2121 . . Cone14ag1013 . Lsi04g01965 Csa04g02244 . . . . . . Bpe11g00430 . . . . Cmo01g01331 Cmo09g00669 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007416 1 1 0 1 2 0 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 2 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02244 Csa_Chr04 FPKM 47.565636 44.043179 56.587437 56.603931 60.104458 76.50309 53.118984 104.781639 115.0802 107.46479