Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02245 ATGGCTGCAAATGCTGTAAATTCCACCCCATTAAGCCTCCCATTATCCATTCCTACTGGGAAATTGAATTCCAGTCCTACAATTTGCCTTTTAACAAAACCCTCAATTCCTACTCTCTCAATTCACTCTACTTTCTCTCTCAGCAACAACAACTTCAGATTTTATTCCAATTTCTCTCTCAGACCTTCTTCTTCTCTTGCTTCAGTTGGAAATGCAGGATTTGTGGAGGAACCTTCAACCAATGTAAAATTTCCAACGTCCTTAACTCTGCCAGGCTGCTCAACTTCGCTGTCGCTGCTTGGCACAGGTTATAGAGAGAAAGTATTTGCAATCATTGGTGTTAAGGTCTATGCTGCAGGACTATACATCAATTCATCTGTCTCAAATGAATTAAATGCTTGGAGGGGACGATCAGCTGCTGCAATTCAGGAGGACTCTTCCTTGTTTGATATAATTTTTCAGTCTCGTTCAGAAAAATCTTTACAGATTGTTCTTGTCCGAGACGTCGATGGAAAAACTTTCTGGGACGCCTTGGATGATGCCATTTCTCCAAGAATCAAAGCACCAACACCGGATGATGAATCTGCATTATCTACCTTTCGTAGCATCTTTGAGGGACGATCTCTTAAGAAAGGAACTTTCATATTCTTGACTTGGTTGGAACCTCCAAAGATGCTCGTTAGCATCTCGATAGATGGCTCACCAACAGGAATAGATGCTACAATTGAATCAAATAATGTGACTTCGTCTCTTTTTGATGTTTTTTTCGGAGACTCTCCTGTTTCTCCTACTTTGAAGGCTTCTGTTGCAACTGGATTGGCTGCAGTTTTGAAATAG 837 40.98 MAANAVNSTPLSLPLSIPTGKLNSSPTICLLTKPSIPTLSIHSTFSLSNNNFRFYSNFSLRPSSSLASVGNAGFVEEPSTNVKFPTSLTLPGCSTSLSLLGTGYREKVFAIIGVKVYAAGLYINSSVSNELNAWRGRSAAAIQEDSSLFDIIFQSRSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPDDESALSTFRSIFEGRSLKKGTFIFLTWLEPPKMLVSISIDGSPTGIDATIESNNVTSSLFDVFFGDSPVSPTLKASVATGLAAVLK* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23096244 23099611 + CsaV3_4G032710.1 Csa04g02245 527855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02245 278 Gene3D - 84 255 IPR016088 -
Csa04g02245 278 Gene3D - 127 273 IPR016089 -
Csa04g02245 278 PANTHER FATTY-ACID-BINDING PROTEIN 3, CHLOROPLASTIC 46 277 - -
Csa04g02245 278 PANTHER FATTY-ACID-BINDING PROTEIN 3, CHLOROPLASTIC 46 277 - -
Csa04g02245 278 SUPERFAMILY Chalcone isomerase 74 278 IPR036298 GO:0016872
Csa04g02245 278 Pfam Chalcone-flavanone isomerase 81 274 IPR016087 GO:0016872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02245 - - - csv:101203019 530.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02245 Csa-Chr4:23096244 Csa05g00894 Csa-Chr5:6943159 3.74E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g9 Blo03g00718 . . . . . . . . . . . . Car09g00605 Sed04g2511 Cpe06g00537 . Bhi09g03586 Tan01g4239 Cmetu07g1432 . Hepe01g1478 Mch11g0970 . Cla11g01672 Cam11g1738 Cec11g1764 Cco11g1765 Clacu11g1897 Cmu11g1708 Cre11g2122 . . . . Lsi04g01966 Csa04g02245 . . . . . Bda12g00751 Bpe11g00431 . . Bma14g00276 . . Cmo09g00667 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009520 2 2 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02245 Csa_Chr04 FPKM 2.174525 2.203396 2.405341 2.561373 4.33288 3.307333 4.231358 6.117584 6.625576 6.320263