Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02246 ATGGATAAAGGCCAGGCTATAGCATTCTATGTCACAATCAGTTGCATCGCTTTTGTCGTGTCGAAGATCTTCATAGCATTGCTCCTTTACAAGCGCTGGAAAAGAAGACACATAATATATGAAGATGGGATATCAGGTGGGAAGATGGTCATGTTCAAGTCTCCAGCAACAAAGTCCTTAAAATCAGATGCATTCCTGAAGAAAACACTAAAACTAAACAACAAGGACATCATTGGCTCTGGAGGGCATGGGATTGTTTACAAACTTGCACTAAGTGATTCTATGAGATTTGCTGTGAAAAGACTGAACAGAGGAAGTGCAGAAAGAGATCAAGGATTTGAGAGAGAATTGGAGGCTATGGGCGATATAAAACATCGGAATGTTGTGACGCTTTATGGATACTACACTGCTCCTCACTATAATCTTCTTGTATATGAGCTAATGCCTAATGGAAGTTTGTATGCATATCTACATGGAAAATCAAATGAGAAGGTTTTGGATTGGTCATCACGCTACAAAATAGCGGTAGGTGCAGCGAGAGGAATATCATACCTTCATCACGACTGTATCCCACACATCATACATAGAGATATCAAGTCAAGCAACATATTGTTGGATGAAAACATGGACGCTCAAGTGTCTGACTTTGGATTGGCGACGCTGATGGAACCTGACAAGACTCATGTATCAACAATTGTGGCAGGCACATTTGGGTACTTGGCTCCAGAATACTTTGATACGGGTCGAGCAACGGTGAAAGGAGATGTCTACAGCTTTGGTGTAGTACTTCTCGAGCTCTTAACAGGGAAAAAACCGACTGATGAGGCGTTTATGGAAGAGGGAACTAAACTTGTGACATGGGTGAAAACAGTTGTTCAGGAGAAAAGGGAAGAATATGTACTTGACCGTCGTTTGGGCTGTTGTCCGGTTGATGAGGTTAATGTCGTATTTAGCATTGCATTGAAGTGTCTTGAACCGGAACCCGCTCAGCGTCCAACAATGGCAGAGGTTGTTAAAGTGCTTGAGCAGATAAGGTCAAATAGCAATGTAACGGATTCTTGA 1062 42.09 MDKGQAIAFYVTISCIAFVVSKIFIALLLYKRWKRRHIIYEDGISGGKMVMFKSPATKSLKSDAFLKKTLKLNNKDIIGSGGHGIVYKLALSDSMRFAVKRLNRGSAERDQGFERELEAMGDIKHRNVVTLYGYYTAPHYNLLVYELMPNGSLYAYLHGKSNEKVLDWSSRYKIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDENMDAQVSDFGLATLMEPDKTHVSTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPTDEAFMEEGTKLVTWVKTVVQEKREEYVLDRRLGCCPVDEVNVVFSIALKCLEPEPAQRPTMAEVVKVLEQIRSNSNVTDS* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23097432 23101989 - CsaV3_4G032720.1 Csa04g02246 527856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02246 353 ProSiteProfiles Protein kinase domain profile. 72 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02246 353 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Csa04g02246 353 SUPERFAMILY Protein kinase-like (PK-like) 67 343 IPR011009 -
Csa04g02246 353 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Csa04g02246 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Csa04g02246 353 Gene3D Transferase(Phosphotransferase) domain 1 148 353 - -
Csa04g02246 353 Pfam Protein kinase domain 74 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02246 353 SMART serkin_6 72 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02246 353 PANTHER BNAA07G39120D PROTEIN 1 346 - -
Csa04g02246 353 Gene3D Phosphorylase Kinase; domain 1 53 147 - -
Csa04g02246 353 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02246 - - - csv:101202781 707.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02246 Csa-Chr4:23097432 Csa04g02769 Csa-Chr4:26547824 7.79E-101 dispersed
Csa04g02246 Csa-Chr4:23097432 Csa01g00213 Csa-Chr1:1379747 1.02E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g10 . . . . . . . . . . . . . Car09g00604 . . . Bhi09g03584 . . . . Mch11g0971 . Cla11g01673 . . . . . . . . . . Lsi04g01967 Csa04g02246 . . . . . . . . . . . . Cmo09g00666 . . . . Cpe14g00338 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78188 PF00069 Pkinase 6.40E-48 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02246 Csa_Chr04 FPKM 10.115131 10.190752 10.144611 11.025158 64.259735 54.401337 54.827614 3.364104 2.576302 2.986669