Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02248 ATGTCGACAATGGCTGCCAGAAGTTTGAATTTATCTTTTCTTCCAACTGGGTTTATAAGTACTTCAAAAACCCAACAAAGTTTCAACTTTGTTTCTTTTTCTTCTCCTCCAAGTTTCAGAGCAATCAAAAACAAAAAGCTTTCATCATCTTCTACCAGAGTAATGGGCTGCTCTTCCTCCTCTTCCCAGAAACCAGATGGCATCAAAGAGGCTGGCACCGTGAATTACAAATCTTTAAGCGATGATGAATGGAAGAAGCGGCTCACGGGAGAGCAGTTTTATATTACCCGTCAGAAGGGAACTGAGAGAGCTTTTACTGGTGAGTATTGGAACACCAAAACGGCAGGGATATACCACTGTATATGTTGTGACACACCTCTGTTTGAATCATCTACTAAATTTGACAGTGGAACTGGTTGGCCATCATATTACCAACCTGTTGGTGATAATGTCAAATCCAAGCTAGACCTTTCCATCATTTTCATGCCTAGAGAGGAAGTTCTTTGTGCTGTCTGTGATGCTCATCTGGGCCATGTATTTAACGATGGACCGCCGCCAACTGGGAAACGTTACTGCATCAATAGTGCGGCACTGAAATTGAAGCCAGATAAGTGA 615 42.28 MSTMAARSLNLSFLPTGFISTSKTQQSFNFVSFSSPPSFRAIKNKKLSSSSTRVMGCSSSSSQKPDGIKEAGTVNYKSLSDDEWKKRLTGEQFYITRQKGTERAFTGEYWNTKTAGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDLSIIFMPREEVLCAVCDAHLGHVFNDGPPPTGKRYCINSAALKLKPDK* 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23111804 23116235 - CsaV3_4G032740.1 Csa04g02248 527858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02248 204 PANTHER METHIONINE SULFOXIDE REDUCTASE 28 203 IPR028427 GO:0006979|GO:0016671|GO:0030091
Csa04g02248 204 Gene3D Peptide methionine sulfoxide reductase. 71 204 - -
Csa04g02248 204 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 81 203 IPR002579 GO:0033743
Csa04g02248 204 PANTHER METHIONINE-R-SULFOXIDE REDUCTASE B1 28 203 - -
Csa04g02248 204 Pfam SelR domain 83 202 IPR002579 GO:0033743
Csa04g02248 204 TIGRFAM TIGR00357: methionine-R-sulfoxide reductase 79 202 IPR002579 GO:0033743
Csa04g02248 204 SUPERFAMILY Mss4-like 79 203 IPR011057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02248 K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] - csv:101203253 411.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02248 Csa-Chr4:23111804 Csa07g00631 Csa-Chr7:4567477 9.99E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g15 . . . . . . . . . . . . . Car09g00602 . Cpe06g00532 . Bhi09g03579 . . . Hepe01g1475 . . Cla11g01675 Cam11g1742 Cec11g1767 Cco11g1768 Clacu11g1900 Cmu11g1711 Cre11g2125 . Cone9ag0242 . . Lsi04g01969 Csa04g02248 . . . . . . . . . . . . Cmo09g00664 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006816 2 4 1 7 1 0 1 1 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02248 Csa_Chr04 FPKM 1.56576 2.052096 3.231937 3.31159 4.087087 3.919706 4.990377 4.658318 5.000729 5.58979