Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g02251 | ATGGATTCCCTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAAACAAAATCGTCAGAAGGAGGATCAATCGCTTGATTCTTGTTCCCTCCCAGCGAAGAAGCGAAAGGAGTCTCGTGATTCTTCGTTGCTCCTAATTCCTGACGCTTCTCCTTACTGCTTGCCCACCAAGAAAAGGGTGTGGGCCCTTCACCCTGATTTTGCCCCGGAGTCATTGGATCTCAATGTTGAATACAAGCCTCATCCTCTGGAGGAAGAATCCATATCGAAATCAGAATTAGAGGGAGAGAAAAAGGAGGAAGAGGATAAGGAAAAGGAAGTTTCTGATGTTGAAATGGAGATTCAAGAGATTGAAACAGTCCAAGATGAAGAGGAAGATGATGGGATTCTTTGTGCGATTTGTCAAAGCACAGACGGGGATCCTTCAGATCCAATTGTCTTCTGCGATGGATGTGATTTGATGGTACACGCTTCATGTTATGGTAATCCTCTTGTAAAGAGTATACCAGAAGGAGATTGGTTCTGTAGCCAATGCTTAGCTTCTTCGTCTTCCAAGACGGAGAAGAAGGTTACAGAAACACCATTTTCATGCTGCCTATGTCCTCTGAAAGGAGGGGCCATGAAGCCCACGAACGACGGCCAATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTTTTTGAGGACCCAGAAGGAAGAGAAGGGATTGATTGCTCGATGATTCTGAAGAGGAGATGGAAAACCAAATGTTATATCTGCAAAACTTCTAGCGGTTGTTCTATTGACTGCTCAGAGCCTAAATGTAGTTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTATGCATTGAGTACCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGGTTTTGTAGAAACCATACAGACTTGTGGAAGAAGCAACAACTAACGGGGAAATTCAAGATAGTGGCTAGAGATGAAGGTAAGTTGTAG | 1008 | 43.95 | MDSLHGLPPLKRLRILQEQEQKQNRQKEDQSLDSCSLPAKKRKESRDSSLLLIPDASPYCLPTKKRVWALHPDFAPESLDLNVEYKPHPLEEESISKSELEGEKKEEEDKEKEVSDVEMEIQEIETVQDEEEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSIPEGDWFCSQCLASSSSKTEKKVTETPFSCCLCPLKGGAMKPTNDGQWAHIVCGLYVPEVFFEDPEGREGIDCSMILKRRWKTKCYICKTSSGCSIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL* | 336 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23124396 | 23126447 | - | CsaV3_4G032770.1 | Csa04g02251 | 527861 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g02251 | 335 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 193 | IPR013083 | - | |
| Csa04g02251 | 335 | Pfam | PHD-zinc-finger like domain | 203 | 300 | - | - | |
| Csa04g02251 | 335 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 315 | IPR013083 | - | |
| Csa04g02251 | 335 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Csa04g02251 | 335 | SMART | PHD_3 | 258 | 313 | IPR001965 | - | |
| Csa04g02251 | 335 | SMART | PHD_3 | 137 | 186 | IPR001965 | - | |
| Csa04g02251 | 335 | MobiDBLite | consensus disorder prediction | 90 | 115 | - | - | |
| Csa04g02251 | 335 | SUPERFAMILY | FYVE/PHD zinc finger | 128 | 194 | IPR011011 | - | |
| Csa04g02251 | 335 | CDD | PHD_BRPF_JADE_like | 137 | 185 | - | - | |
| Csa04g02251 | 335 | ProSiteProfiles | Zinc finger PHD-type profile. | 135 | 188 | IPR019787 | - | |
| Csa04g02251 | 335 | MobiDBLite | consensus disorder prediction | 15 | 48 | - | - | |
| Csa04g02251 | 335 | Pfam | PHD-finger | 138 | 186 | IPR019787 | - | |
| Csa04g02251 | 335 | Coils | Coil | 90 | 134 | - | - | |
| Csa04g02251 | 335 | PANTHER | PHD FINGER PROTEINS | 106 | 331 | - | - | |
| Csa04g02251 | 335 | PANTHER | PHD FINGER PROTEINS | 3 | 99 | - | - | |
| Csa04g02251 | 335 | Coils | Coil | 10 | 30 | - | - | |
| Csa04g02251 | 335 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 201 | 313 | IPR034732 | - | |
| Csa04g02251 | 335 | CDD | ePHD | 204 | 312 | - | - | |
| Csa04g02251 | 335 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 106 | 331 | - | - | |
| Csa04g02251 | 335 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 99 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g02251 | Csa-Chr4:23124396 | Csa06g00309 | Csa-Chr6:2260725 | 2.23E-24 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 31608 | PF13832 | zf-HC5HC2H_2 | 5.20E-29 | CL0390 | Csa | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g02251 | K11380 | - | csv:101203744 | 655.21 |