Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02251 ATGGATTCCCTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAAACAAAATCGTCAGAAGGAGGATCAATCGCTTGATTCTTGTTCCCTCCCAGCGAAGAAGCGAAAGGAGTCTCGTGATTCTTCGTTGCTCCTAATTCCTGACGCTTCTCCTTACTGCTTGCCCACCAAGAAAAGGGTGTGGGCCCTTCACCCTGATTTTGCCCCGGAGTCATTGGATCTCAATGTTGAATACAAGCCTCATCCTCTGGAGGAAGAATCCATATCGAAATCAGAATTAGAGGGAGAGAAAAAGGAGGAAGAGGATAAGGAAAAGGAAGTTTCTGATGTTGAAATGGAGATTCAAGAGATTGAAACAGTCCAAGATGAAGAGGAAGATGATGGGATTCTTTGTGCGATTTGTCAAAGCACAGACGGGGATCCTTCAGATCCAATTGTCTTCTGCGATGGATGTGATTTGATGGTACACGCTTCATGTTATGGTAATCCTCTTGTAAAGAGTATACCAGAAGGAGATTGGTTCTGTAGCCAATGCTTAGCTTCTTCGTCTTCCAAGACGGAGAAGAAGGTTACAGAAACACCATTTTCATGCTGCCTATGTCCTCTGAAAGGAGGGGCCATGAAGCCCACGAACGACGGCCAATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTTTTTGAGGACCCAGAAGGAAGAGAAGGGATTGATTGCTCGATGATTCTGAAGAGGAGATGGAAAACCAAATGTTATATCTGCAAAACTTCTAGCGGTTGTTCTATTGACTGCTCAGAGCCTAAATGTAGTTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTATGCATTGAGTACCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGGTTTTGTAGAAACCATACAGACTTGTGGAAGAAGCAACAACTAACGGGGAAATTCAAGATAGTGGCTAGAGATGAAGGTAAGTTGTAG 1008 43.95 MDSLHGLPPLKRLRILQEQEQKQNRQKEDQSLDSCSLPAKKRKESRDSSLLLIPDASPYCLPTKKRVWALHPDFAPESLDLNVEYKPHPLEEESISKSELEGEKKEEEDKEKEVSDVEMEIQEIETVQDEEEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSIPEGDWFCSQCLASSSSKTEKKVTETPFSCCLCPLKGGAMKPTNDGQWAHIVCGLYVPEVFFEDPEGREGIDCSMILKRRWKTKCYICKTSSGCSIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL* 336
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 23124396 23126447 - CsaV3_4G032770.1 Csa04g02251 527861
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02251 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 193 IPR013083 -
Csa04g02251 335 Pfam PHD-zinc-finger like domain 203 300 - -
Csa04g02251 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 315 IPR013083 -
Csa04g02251 335 MobiDBLite consensus disorder prediction 1 48 - -
Csa04g02251 335 SMART PHD_3 258 313 IPR001965 -
Csa04g02251 335 SMART PHD_3 137 186 IPR001965 -
Csa04g02251 335 MobiDBLite consensus disorder prediction 90 115 - -
Csa04g02251 335 SUPERFAMILY FYVE/PHD zinc finger 128 194 IPR011011 -
Csa04g02251 335 CDD PHD_BRPF_JADE_like 137 185 - -
Csa04g02251 335 ProSiteProfiles Zinc finger PHD-type profile. 135 188 IPR019787 -
Csa04g02251 335 MobiDBLite consensus disorder prediction 15 48 - -
Csa04g02251 335 Pfam PHD-finger 138 186 IPR019787 -
Csa04g02251 335 Coils Coil 90 134 - -
Csa04g02251 335 PANTHER PHD FINGER PROTEINS 106 331 - -
Csa04g02251 335 PANTHER PHD FINGER PROTEINS 3 99 - -
Csa04g02251 335 Coils Coil 10 30 - -
Csa04g02251 335 ProSiteProfiles Extended PHD (ePHD) domain profile. 201 313 IPR034732 -
Csa04g02251 335 CDD ePHD 204 312 - -
Csa04g02251 335 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 106 331 - -
Csa04g02251 335 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 99 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02251 Csa-Chr4:23124396 Csa06g00309 Csa-Chr6:2260725 2.23E-24 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31608 PF13832 zf-HC5HC2H_2 5.20E-29 CL0390 Csa TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02251 K11380 - csv:101203744 655.21