Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02256 ATGCCTGGGAATAAGTATAACGGTAATTCAAACGATAGTTCAGACCGTATACCTGGTCGACTGGAAAGGCTCTTGCGAGAGAGAAAACTAAGAAAAAGCTCTAAGGATTCATACTCAAACGAAGTAAATGACTACAGTAAGGAGTCTGAACTAATTGAAAATGACCATCGTTTGAAAGAAGAAGAAACCGTTGGAATTCCCTGTAAATTTTCCGAAGCTTCTGTAGCCTCAAGGACCTTTGGCGAAGGATGTGACAAGCAAGATGGCAAGCCACCCAGACAACGGTTGCTGGTTGTGGCCAATAGGTTACCCGTCTCTGCAGTTAGGAGGGGTGAAGATTCCTGGTCTCTAGAGATCAGTGCTGGAGGCCTAGTGAGTGCACTTCTGGGCGTGAAGGAATTTGAGGCGAGATGGATTGGTTGGGCTGGTGTAAACGTACCCGATGAGGTGGGACAAAAGGCACTGACTGAAGCTTTGGCTGAAAAGAGGTGTATCCCTGTTTTCCTTGATGAAGAGATTGTTCATCAATACTACAATGGCTATTGTAACAACATTTTATGGCCTCTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCCGCATACAAGAAGGCAAACCAAATGTTTGCGGATGTAGTTAACAAGCACTATGAGGAGGGTGATGTCGTTTGGTGCCATGATTATCATCTTATGTTCCTTCCAAAATGTCTCAAGGAACATAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCCTCCTCTGAAATCCACAGAACCCTTCCATCCCGATCAGAGCTTCTGCGTTCAGTACTTGCTGCTGATCTGGTTGGTTTTCACACATATGATTATGCGCGTCATTTCGTAAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGACCAAGGAAAGCTAACGCGGGTGGCTGCATTTCCTATTGGTATCGACTCGGAACGATTCATACGTGCCCTTAAGATTCCTGAAGTCCAAGTACATATTGAAGAGTTAAAGGAAAGATTCAAAGGTCGAAAGGTAATGTTAGGGGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAATTCTTGGAGGAAAACCCTTATTGGCGTGATAAAGTTGTTTTGCTACAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATACCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGGCGTATTAATGGGAGATTTGGAACACTGACTACTGTGCCTATACATCACCTGGATCGCTCCCTCGATTTTCATGCACTGTGTGCACTATATGCTGTAACAGATGTTGCACTTGTCACATCTTTGAGGGATGGAATGAATCTCGTCAGTTATGAATTTGTTGCTTGCCAGGATGCAAAGAAAGGAGTTCTAATTCTTAGCGAGTTTGCTGGTGCTGCACAATCCCTGGGTGCTGGAGCACTTTTGGTCAACCCCTGGAACATAACAGAAGTTGCAAAATCAATTGATCGAGCATTAAATATGGAAGCTGAAGAAAGAGAAAAGCGCCATAGGCATAATTTTCTCCATGTGACTACACACACTGCTCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAACGATACAGTCGTTGAAGCTGAACTGAGGATTCGACAATGTCCGCCCCCGCTTCCGTTTGATAATGCAATTAAACATTATGAGCAATCTACTAATAGATTACTTATACTGGGGTTCAATTCAACATTAACTGAACCGGTAGACACACCTGAGAGACGAGGTGATCAGATTAGAGAAATGGATCTGAAACTACACCCAGATTTGAAAGAACCATTGACAGCAATTTGCAATGACCCAAACACGACAGTAGTCATTCTCAGTGGGAGTGACAGAACTGTCTTGGATGATAACTTTGGGGAGTATGACATGTGGTTGGCTGCTGAAAATGGAATGTTTCTACGCTTCACAAGGGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTGTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTATGAGCTCCGGGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCACGGGATATGCTACAGCATTTATGGACGGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTGGCGTTACCAAGGGATCAGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACTTTCTTCGAGCCAGAACTTCCATCGGATACTATAGGCATGCCAAGAGCCAAGGGAACCGATGGACTTAAATTAACGGGTGAGAGAAAACCTTCCATCAAAGTTCCTCTAAACAGGAATGGGTCAAAATCGCCACACAATAAGGGTCGGTCGAGCTCGGAGAAGAAAACTTCAAATCATAACTGTGCAAACGGTCGTAAACCATCACCGGAGAAGATTCAATGGAATGTGCTTGATCTCAAGGCTGAGAACTACTTCTCTTGTGCTGTTGGAAGAGCTCGAACAAATGCTCGGTATCTGCTCGGATCATCAGATGAAGTGGTGGCATTCCTAAAGGAGTTGGCAGATGCAAATGCATTTTCTTGA 2787 43.81 MPGNKYNGNSNDSSDRIPGRLERLLRERKLRKSSKDSYSNEVNDYSKESELIENDHRLKEEETVGIPCKFSEASVASRTFGEGCDKQDGKPPRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSERFIRALKIPEVQVHIEELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIDRALNMEAEEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQCPPPLPFDNAIKHYEQSTNRLLILGFNSTLTEPVDTPERRGDQIREMDLKLHPDLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHYELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMPRAKGTDGLKLTGERKPSIKVPLNRNGSKSPHNKGRSSSEKKTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRARTNARYLLGSSDEVVAFLKELADANAFS* 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23161353 23170505 - CsaV3_4G032820.1 Csa04g02256 527866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02256 928 CDD HAD_TPP 593 813 - -
Csa04g02256 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 922 IPR001830 GO:0003824|GO:0005992
Csa04g02256 928 MobiDBLite consensus disorder prediction 1 20 - -
Csa04g02256 928 MobiDBLite consensus disorder prediction 1 15 - -
Csa04g02256 928 CDD GT20_TPS 95 560 IPR001830 GO:0003824|GO:0005992
Csa04g02256 928 Gene3D - 733 927 IPR023214 -
Csa04g02256 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 922 - -
Csa04g02256 928 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 563 - -
Csa04g02256 928 MobiDBLite consensus disorder prediction 818 876 - -
Csa04g02256 928 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824|GO:0005992
Csa04g02256 928 Pfam Trehalose-phosphatase 618 814 IPR003337 GO:0003824|GO:0005992
Csa04g02256 928 Coils Coil 35 55 - -
Csa04g02256 928 Gene3D Glycogen Phosphorylase B; 87 341 - -
Csa04g02256 928 Gene3D Glycogen Phosphorylase B; 342 544 - -
Csa04g02256 928 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825|GO:0005992
Csa04g02256 928 SUPERFAMILY HAD-like 592 922 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02256 Csa-Chr4:23161353 Csa07g00478 Csa-Chr7:3465683 6.34E-139 dispersed
Csa04g02256 Csa-Chr4:23161353 Csa01g02281 Csa-Chr1:19948842 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02256 K16055 - csv:101204478 1865.12