Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02257 ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTCACCAATGGAACCACAAGTAACAAAAGCTTTCCCAGAAACTCACTCCTTGTTGCCTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCTCCATTTCTCTAACCTCCAACTCCAAGAGGTCGGCCCTTCAAGTGCGAGCCCAAGAGCTGGATCGTGTCCCTTTGGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGATATATGGAATAAAACGTGGTACCCGAAGGCGGCAGATCATGTGAACACAGAAAAACCTTGGTACGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCAACTATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGTGCTTTTGTGATTGTGGTAAATGCAGAAAAAATTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACTGTAGAAACTTTTGATCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGACCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG 747 46.05 MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNSKRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23197540 23201105 + CsaV3_4G032830.1 Csa04g02257 527867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02257 248 SUPERFAMILY Ribosomal protein L13 106 239 IPR036899 GO:0003735|GO:0005840|GO:0006412
Csa04g02257 248 MobiDBLite consensus disorder prediction 224 248 - -
Csa04g02257 248 Pfam Ribosomal protein L13 111 228 IPR005822 GO:0003735|GO:0005840|GO:0006412
Csa04g02257 248 MobiDBLite consensus disorder prediction 1 25 - -
Csa04g02257 248 TIGRFAM rplM_bact: ribosomal protein uL13 106 237 IPR005823 GO:0003735|GO:0005840|GO:0006412
Csa04g02257 248 Hamap 50S ribosomal protein L13 [rplM]. 112 238 IPR005822 GO:0003735|GO:0005840|GO:0006412
Csa04g02257 248 ProSitePatterns Ribosomal protein L13 signature. 202 224 IPR023563 GO:0003735|GO:0005840|GO:0006412
Csa04g02257 248 PANTHER RIBOSOMAL PROTEIN L13 66 245 IPR005822 GO:0003735|GO:0005840|GO:0006412
Csa04g02257 248 Gene3D Ribosomal protein L13 101 244 IPR036899 GO:0003735|GO:0005840|GO:0006412
Csa04g02257 248 CDD Ribosomal_L13 112 225 IPR005822 GO:0003735|GO:0005840|GO:0006412
Csa04g02257 248 PANTHER BNAA02G18970D PROTEIN 66 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02257 K02871 RP-L13, MRPL13, rplM; large subunit ribosomal protein L13 - csv:101204726 504.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01100 Csa-Chr3:8700653 Csa04g02257 Csa-Chr4:23197540 7.11E-08 dispersed
Csa04g02257 Csa-Chr4:23197540 Csa06g02869 Csa-Chr6:24985594 1.28E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g36 Blo03g00706 . . . . . . . . . Cma01g01268 . Car01g01085 Car09g00596 . Cpe06g00526 Cpe02g00654 Bhi09g03565 . . . Hepe01g1465 . . Cla11g01689 Cam11g1753 Cec11g1777 Cco11g1779 Clacu11g1913 Cmu11g1724 Cre11g2134 Cone6ag0209 Cone9ag0237 . . Lsi04g01980 Csa04g02257 . Cme07g00501 . . . . Bpe11g00439 . . Bma14g00274 . Cmo01g01322 Cmo09g00657 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006395 1 1 1 2 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02257 Csa_Chr04 FPKM 16.371517 16.801876 9.736505 9.980902 5.865156 4.699704 6.87778 11.863667 11.39613 17.065586