Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02258 ATGGATCCCATGGATGGATTTCTCAACCCAACCAAATCCCTAACAATGTTGCTGGTTTTGAAAATAATCTCACTTGTGATTGCACCTTTCTTAATGCTACAGTCTGCCATGTCATCAGCATGTAACTTCTTCTTCTTCTTCCTCTCTCTTTCTCAATCTTCTGATCAGAATCGAAGTTCTTTGTCAAAATTTTGTGAAATTATATTTTGGGTCTTTGTTTTTGGGGTGCAGAGTTCTCAAATCGCAGAGCCTTCAAGGCACTCTCCCACCCCATCTTGTGCGTTTGCCGTTTTTGCAGCAAATGTAAGTTCTTATCGCCGTTTTATACTCAAAATCAGCGACCCATTTGCTCGATTAGTTAATATCAGCTGTTTTTTGTGCAGTGATCTCACTCGGAACTATCTCAGCGGCCAAATTCCTCCAGAATGGGGCTCTACGAATCTTGTCAGCATTTACCTTCTTGGAAATCGGTTGACAGGTTTGATTCCAGAGGAGATTGGGAATATCACTACTCTCGAGAATTTGGTCCTGGAAATCAATCAGCTGTCGGGAAGCATTCCTCAGGCGCTTGGAAATTTGCCCCAGATACAGAGATTACATCTTACATCAAACAACTTTTCGGGAGAGTTGCCAATGTCACTGGGAAAGCTGACCACATTGAAGGAATTTCAAATTGGTGACAATAACTTCTCTGGGCCAATACCAAATTTCATACGTAATTGGACGAATCTTACTAAATTATTCATTCAGGCAAGTGGATTGAGTGGACCCATTCCTTCTGACATTGGACTATTGACAAAGTTATCTGACTTGAGAATCAGTGACTTGAGTGCATCATCACCCTTTCCATCCCTTCGTAATTTGAAAGACATGACAATTCTGGTATTGAGAAGTTGCAACATCTCTGGAAGGCTGCCCAACTATCTGGACAGGATGCCATCATTGAAAATCTTAGACCTCAGCTTTAACAGTCTAAGTGGACGAATTCCAACCAGATTTGATGCTCTTAAAGGGTTGGATAACATATTTTTAACTGGAAACATGCTAAATGGATCAGTGCCTGATTGGATGTTGAAAGGGAATGGCATTGATCTTTCCTATAATAATTTTACAGTCAGTGTTGCTGGGGAAAGTTGCCGGTCCCAAAAAATGAACCTCTTTGCAAGCTCGTCACAAGAGGATTATGGAGTTCTTTCATGTTTAGCAGGCTCATCCTGTTCAAAATCTTGGTACTCTCTTCATATAAATTGTGGTGGGAAGGAAGAAACCATAAATGGAACTACAGTTTTTAAAGGAGACCGAAATGCGGGGAGCTCTATGTTTTTTGTAACTGGAACAAATTGGGCAATCAGCAACACTGGTACTTTTTTGGATGATGATGGTGGCTCTCGAGATGAATACACCGCAACAAATTCTTCTACTCTTTCTATGATAAATCCTGAACTGTACATGACTGCTCGTGTTTCTCCATTATCTGTTACTTACTTTGGGTTCTGTATGGGAAATGGAAACTACACTGTAAGCCTCCATTTTGCAGAGATAATGTTTACTGATGACAAGACATTCAGTAGTCTCGGAAGACGCATATTTGATGTTTATCTGCAGAAAAAGCTGGTGCTAGAGAATTTCAATATAGTGGATGCAGCAGGTGATGTAGGTAAAGCAGTCATAAAAAAATTCCCAGTTACTGTGGTGAATGGAACTGTGGAGATCCGCTTCTATTGGGCAGGGAAGGGGACAAATGCCATCCCTGTGAGTGGAGTCTATGGTCCTCTTATATCTGCCATTTCAGTAGATCCTGACTTTGAACCTCCATTTGATGGTGAAGAAACTGGAAAATCTGGTATACCTGTAGGTGCAGTGATCGGCATCGCAGCTGCTGCGGTTTTTGTTGTATTATTGGCCGTTGGAATCTTGTGGTGGAGCATATGCCTACGACATGAAAGGACACTTGAACAAGAGTTACGAGGTTTGGACTTGCAAACTTGCTCTTTTACATTAAGGCAAATAAAAGTCGCCACAAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTCGGTCCTGTCTATAAGGGTGTTCTTGCGGATGGCACAACAATTGCAGTAAAGCAACTGTCTTCTAAATCAAAGCAAGGAAATCGTGAATTCGTGAATGAGATTGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAAGCTTTATGGATGTTGTATTGAAGGGAATCAGCTTTTGTTAGTATATGAATACATGGAAAACAATAGCCTTGCCCATGCCTTGTTTGGTCAAGAAGAAAGTGAATTAGAACTGGATTGGTCAACAAGACAAAAGATCTGTGTTGGTATAGCAAGAGGTTTGGCTTATCTTCATGAAGAGTCAAGACTAAAGATTGTCCACAGGGACATCAAAGCTACTAATATTCTGTTAGACAAAGATCTAAACCCCAAGATATCCGACTTCGGCTTGGCCAAGCTTGATGAAGAAGGAAATACTCATATAAGCACTCGAATTGCTGGAACTTTTGGATACATGGCGCCAGAATATGCAATGCAAGGACACTTAACTGATAAAGCAGATGTTTATAGCTTTGGAGTTGTAGCTTTAGAAATAGTTAGCGGAAGGATGAACACCACTTTATGGGCAGCGAACGATTGCTCTTATCTTCTAGACTCGGCACTGAAGTTTAAAGAAAAGAACAGTTTATTGGAGCTAGTTGATCCAGGGTTAGGCTCCAACTTCAACAAAGGAGAGGCACTGAGAATGATCAAAATTGCTCTCCACTGTACTAATGTCTCTCCTGCAGCAAGACCTAACATGTCATCTGTAGTGAGCATGTTGGAAGGCAGGCAGGGTATTGAGGACATAGTGTCAAATCCAAGTGTCACTAAAGAAGCAAGAAATGCAGCATGGACTCGATTATTGCAAGACAACGACCGATCTAATAATGCAAACCAGAAGCATGGTCTGTTGGCTGATGTTTCGACAACAGGTTCTTCAACCTCTGGAAGCGATCTCTATCCGATCAACGTATCTCAGTACTTGAACAACAGAGATACTATACTATGA 3072 41.21 MDPMDGFLNPTKSLTMLLVLKIISLVIAPFLMLQSAMSSACNFFFFFLSLSQSSDQNRSSLSKFCEIIFWVFVFGVQSSQIAEPSRHSPTPSCAFAVFAANVSSYRRFILKISDPFARLVNISCFLCSDLTRNYLSGQIPPEWGSTNLVSIYLLGNRLTGLIPEEIGNITTLENLVLEINQLSGSIPQALGNLPQIQRLHLTSNNFSGELPMSLGKLTTLKEFQIGDNNFSGPIPNFIRNWTNLTKLFIQASGLSGPIPSDIGLLTKLSDLRISDLSASSPFPSLRNLKDMTILVLRSCNISGRLPNYLDRMPSLKILDLSFNSLSGRIPTRFDALKGLDNIFLTGNMLNGSVPDWMLKGNGIDLSYNNFTVSVAGESCRSQKMNLFASSSQEDYGVLSCLAGSSCSKSWYSLHINCGGKEETINGTTVFKGDRNAGSSMFFVTGTNWAISNTGTFLDDDGGSRDEYTATNSSTLSMINPELYMTARVSPLSVTYFGFCMGNGNYTVSLHFAEIMFTDDKTFSSLGRRIFDVYLQKKLVLENFNIVDAAGDVGKAVIKKFPVTVVNGTVEIRFYWAGKGTNAIPVSGVYGPLISAISVDPDFEPPFDGEETGKSGIPVGAVIGIAAAAVFVVLLAVGILWWSICLRHERTLEQELRGLDLQTCSFTLRQIKVATNNFDAANKIGEGGFGPVYKGVLADGTTIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYMENNSLAHALFGQEESELELDWSTRQKICVGIARGLAYLHEESRLKIVHRDIKATNILLDKDLNPKISDFGLAKLDEEGNTHISTRIAGTFGYMAPEYAMQGHLTDKADVYSFGVVALEIVSGRMNTTLWAANDCSYLLDSALKFKEKNSLLELVDPGLGSNFNKGEALRMIKIALHCTNVSPAARPNMSSVVSMLEGRQGIEDIVSNPSVTKEARNAAWTRLLQDNDRSNNANQKHGLLADVSTTGSSTSGSDLYPINVSQYLNNRDTIL* 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23201564 23210278 - CsaV3_4G032840.1 Csa04g02258 527868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02258 1023 Pfam Protein tyrosine and serine/threonine kinase 680 948 IPR001245 GO:0004672|GO:0006468
Csa04g02258 1023 ProSiteProfiles Protein kinase domain profile. 677 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02258 1023 Gene3D - 410 600 - -
Csa04g02258 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 119 301 - -
Csa04g02258 1023 SMART serkin_6 677 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02258 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 300 355 - -
Csa04g02258 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 392 991 - -
Csa04g02258 1023 Gene3D Phosphorylase Kinase; domain 1 642 752 - -
Csa04g02258 1023 MobiDBLite consensus disorder prediction 978 1003 - -
Csa04g02258 1023 Gene3D Ribonuclease Inhibitor 211 280 IPR032675 -
Csa04g02258 1023 Gene3D Ribonuclease Inhibitor 281 396 IPR032675 -
Csa04g02258 1023 Gene3D Ribonuclease Inhibitor 101 210 IPR032675 -
Csa04g02258 1023 SUPERFAMILY Protein kinase-like (PK-like) 662 949 IPR011009 -
Csa04g02258 1023 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 300 355 - -
Csa04g02258 1023 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 392 991 - -
Csa04g02258 1023 CDD STKc_IRAK 683 950 - -
Csa04g02258 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Csa04g02258 1023 SUPERFAMILY L domain-like 129 356 - -
Csa04g02258 1023 Gene3D Transferase(Phosphotransferase) domain 1 753 961 - -
Csa04g02258 1023 Pfam Malectin domain 412 596 IPR021720 -
Csa04g02258 1023 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 119 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02258 Csa-Chr4:23201564 Csa04g02262 Csa-Chr4:23235696 6.42E-06 dispersed
Csa06g02561 Csa-Chr6:22666172 Csa04g02258 Csa-Chr4:23201564 1.52E-94 dispersed
Csa04g02258 Csa-Chr4:23201564 Csa04g02261 Csa-Chr4:23231069 6.03E-20 proximal
Csa01g02289 Csa-Chr1:20029642 Csa04g02258 Csa-Chr4:23201564 1.43E-12 transposed
Csa04g00828 Csa-Chr4:5796762 Csa04g02258 Csa-Chr4:23201564 9.05E-06 transposed
Csa05g01091 Csa-Chr5:11066223 Csa04g02258 Csa-Chr4:23201564 0 transposed
Csa06g02406 Csa-Chr6:21476372 Csa04g02258 Csa-Chr4:23201564 0 transposed
Csa07g01190 Csa-Chr7:11679101 Csa04g02258 Csa-Chr4:23201564 0 transposed
Csa04g00800 Csa-Chr4:5599656 Csa04g02258 Csa-Chr4:23201564 2.59E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78189 PF07714 PK_Tyr_Ser-Thr 7.60E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02258 - - csv:101220843 1660.2