Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02262 ATGCTGTTGGCGCGATTTCTCGCCGTTCTTTTCCTCTCATCTCTCTGCTTTTTCATAACTTTCACTTCCGCCGCCACTCGGCTGCCGCCCGACGAAGTGGATGCGTTGGAGGAAATCGGAAAAATATTAGGGAAGACGGACTGGAATTTCAGGGAGGATCCATGCGGCGGCGAAGCTAGTGGTTGGATATCGGAATCGAATAAATTCGATACTAATTTCGAAAATAATGTCACTTGCGACTGCACCTTCCAAAATAATACCGTCTGTCACGTCACTAACATTCTTCTCAAGGCGCAGAGCCTTCAAGGTACTCTGCCACCGCAAATTGTGAGGTTGCCTTTCCTTGAAGAACTTGATCTCACCCGCAACTATCTCAGCGGTCCAATTCCTCCAGAATGGGGTTCAACCAAGCTTCTCAAAATTTCCCTTCTTGGAAATCGATTGACAGGTCCAATCCCAAAAGCGATTGGAAACATCACCACTCTTCAAGAGTTGGTTTTGGAAATGAATCATTTCTCTGGAAATATACCTCCAGAACTTGGGAATTTGGCCAACTTATCAAGATTACTTCTTACCTCCAACAACTTTTCTGGGGAGCTACCACCTTCACTGGCTAGGATAACGACATTAACGGATTTTCGAATTGGTGACAATAACTTTACAGGACCAATACCTACGTTTCTTCAGAATTGGACGAATCTTGATAAAATAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATCTGAGAATCAGTGACTTGAATGGAGGTTCATCGCAACTTCCACCGCTGAATACTTTGACAAAGTTGAAACACCTGATATTAAGGAGTTGCAGTATAACTGGGATGCTGCCTGACATTCTTGCTGGGTTTTCAGACTTGAGAACATTAGACTTTAGTTTCAACAAAATTACTGGACCAATACCTCACAGCTTTGAAGCGTTGAAAAAAGTTGATAGCATATTTCTTACTGGAAACTTGCTAAATGGATCAGTGCCCAATTGGATGCTAAATCAAGGAAAAAGCATAGATCTCTCTTATAACACATTTACTCAGAGTCAGAACACTGGTTGCCAACCACGAAACTTAAACCTATTTGCAAGCTCTTCAGAGGACAGTAATTCTGGAACAGTATCATGTTTAGGCGCCTGTGAAAAAACATGGTACTCTGTCCATATCAACTGTGGCGGGAATGAAGAATTCATTAACGGAACAACCAAATTTGATGCAAACCCAGAAACTGGAACATCATCATTTTTTCTTCAAGGTAGAACCAATTGGGGATTTAGCAACACTGGTACTTTTATGGACGATGGTCAGACATCAGATGATTTTATTGCAAGAAATTTATCTGCTCTCTCGATGCCAAATCCTGAATTGTACGTCAGGGCACGCATTTCTCCAATCTCTCTTACTTATTATGCACATTGCTTGGGTACTGGAAACTACACATTAAGCCTCCATTTTGCTGAGATAGCATTTACTAATGATGAAACATATAGAAGCCTTGGCAGACGCGTATTTGATGTCTATGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCCGCAGGTGGAATTGGCAAACCTCTTGTAAAGAAATTCACAGTTTCTGTGATTAATGGTACTGTAGAAATCCGCCTATTTTGGGCTGGGAAGGGGTCAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCTTTAATTTCTGCCATTTCTCTTGATCCTGACTTTGAGCCACCATCAGAAGGTGGAAATGCCATTTCTGCCGGTGCAGTGGCTGGAATTGTGGTTGCTGTGGTCTTTGTTATCCTCTTGGTTCTTGGAGTGCTGTGGTGGAGAGGCTGTCTAAGAAAGCCAAGCACACTTGAGCAAGAGTTGAAGGGTCTAGATCTTGGAACAGGTTCATTTTCATTAAGACAAATCAGAGATGCCACTAATAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTTCAAGGGAGTTCTTAATGATGGCAGTGTAATCGCAGTGAAGCAACTTTCTTCAAAGTCAAAGCAAGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTTTGGATGTTGTATTGAAGGAGATCAACTTTTGCTAATCTACGAGTATCTGGAAAATAATAGCCTTGCTCGTGCCTTATTCGGACCTGAAGAATATCAACTGAAATTGGATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAAAGGTTTAGCATATCTTCATGATGAGTCAAGATTAAAGATCGTTCACCGAGATATCAAAGCTACCAATGTTCTTCTCGATAAAAAACTAAACCCTAAGATTTCCGACTTTGGCTTGGCCAGGCTGGATGACGAAGGAAATACACACATCAGCACACGGGTTGCTGGAACCTATGGATACATGGCACCAGAATATGCAATGCGAGGCTACTTAACTGATAAAGCAGATGTTTACAGCTTTGGTGTGGTGGCATTAGAAATCGTGGGTGGTCGAAGCAACACAAGTTTTGGAACCAAGGATGATTGCTTATACCTTCTTGACTATGCTAATCTTTTAAAAGTAAGAGGGGATTTACTAGACCTTGTCGATTCACGGTTAGGCTCTGATTTCAACAAGACAGAGGCGATGACGATGATCAATATCGCTCTTCAATGCACGGACATCAGTGCTGCAGATAGACCATCAATGTCAACAGTAGTTGGGATATTGGAAGGGAAAATTGCCGTGGAGGAGTTGGCTTCAGATCCCAATGTCTCAAAGCAAGATGTGAATGCAATGTGGTGCCAGATTTATCGCCAGAAAGGGAAGACGATGAGCGAAACGCAAAGTATGTTGACATGTGAGAGCGAGAGCGAGACACAAAGTATGTTGATGGATGGACCATGGACTGATTCTTCAATTGCTGACAGTGATTCCCATCCCCATCATGGTTGA 3027 42.29 MLLARFLAVLFLSSLCFFITFTSAATRLPPDEVDALEEIGKILGKTDWNFREDPCGGEASGWISESNKFDTNFENNVTCDCTFQNNTVCHVTNILLKAQSLQGTLPPQIVRLPFLEELDLTRNYLSGPIPPEWGSTKLLKISLLGNRLTGPIPKAIGNITTLQELVLEMNHFSGNIPPELGNLANLSRLLLTSNNFSGELPPSLARITTLTDFRIGDNNFTGPIPTFLQNWTNLDKIAIQASGLSGPIPSEIGLLTKLTDLRISDLNGGSSQLPPLNTLTKLKHLILRSCSITGMLPDILAGFSDLRTLDFSFNKITGPIPHSFEALKKVDSIFLTGNLLNGSVPNWMLNQGKSIDLSYNTFTQSQNTGCQPRNLNLFASSSEDSNSGTVSCLGACEKTWYSVHINCGGNEEFINGTTKFDANPETGTSSFFLQGRTNWGFSNTGTFMDDGQTSDDFIARNLSALSMPNPELYVRARISPISLTYYAHCLGTGNYTLSLHFAEIAFTNDETYRSLGRRVFDVYVQGKLELKDFNIADAAGGIGKPLVKKFTVSVINGTVEIRLFWAGKGSNAIPVRGVYGPLISAISLDPDFEPPSEGGNAISAGAVAGIVVAVVFVILLVLGVLWWRGCLRKPSTLEQELKGLDLGTGSFSLRQIRDATNNFDAANKIGEGGFGPVFKGVLNDGSVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLFGCCIEGDQLLLIYEYLENNSLARALFGPEEYQLKLDWPTRQKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKKLNPKISDFGLARLDDEGNTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGVVALEIVGGRSNTSFGTKDDCLYLLDYANLLKVRGDLLDLVDSRLGSDFNKTEAMTMINIALQCTDISAADRPSMSTVVGILEGKIAVEELASDPNVSKQDVNAMWCQIYRQKGKTMSETQSMLTCESESETQSMLMDGPWTDSSIADSDSHPHHG* 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23235696 23256570 - CsaV3_4G032880.1 Csa04g02262 527872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02262 1008 Pfam Malectin domain 402 586 IPR021720 -
Csa04g02262 1008 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Csa04g02262 1008 SMART serkin_6 663 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02262 1008 Gene3D - 400 589 - -
Csa04g02262 1008 MobiDBLite consensus disorder prediction 982 999 - -
Csa04g02262 1008 Pfam Leucine rich repeat 281 340 IPR001611 GO:0005515
Csa04g02262 1008 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 79 977 - -
Csa04g02262 1008 SUPERFAMILY Protein kinase-like (PK-like) 647 941 IPR011009 -
Csa04g02262 1008 Gene3D Ribonuclease Inhibitor 195 270 IPR032675 -
Csa04g02262 1008 ProSiteProfiles Protein kinase domain profile. 663 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02262 1008 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 79 977 - -
Csa04g02262 1008 CDD STKc_IRAK 669 936 - -
Csa04g02262 1008 SUPERFAMILY L domain-like 84 347 - -
Csa04g02262 1008 MobiDBLite consensus disorder prediction 982 1008 - -
Csa04g02262 1008 Gene3D Ribonuclease Inhibitor 271 399 IPR032675 -
Csa04g02262 1008 Gene3D Ribonuclease Inhibitor 45 194 IPR032675 -
Csa04g02262 1008 Pfam Protein tyrosine and serine/threonine kinase 666 932 IPR001245 GO:0004672|GO:0006468
Csa04g02262 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Csa04g02262 1008 Gene3D Transferase(Phosphotransferase) domain 1 739 949 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02289 Csa-Chr1:20029642 Csa04g02262 Csa-Chr4:23235696 0 dispersed
Csa04g02258 Csa-Chr4:23201564 Csa04g02262 Csa-Chr4:23235696 6.42E-06 dispersed
Csa04g02262 Csa-Chr4:23235696 Csa06g02406 Csa-Chr6:21476372 0 dispersed
Csa04g02261 Csa-Chr4:23231069 Csa04g02262 Csa-Chr4:23235696 5.25E-19 tandem
Csa04g02262 Csa-Chr4:23235696 Csa04g02263 Csa-Chr4:23267886 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78190 PF07714 PK_Tyr_Ser-Thr 2.20E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02262 - - csv:101221782 1829.3