Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02262 | ATGCTGTTGGCGCGATTTCTCGCCGTTCTTTTCCTCTCATCTCTCTGCTTTTTCATAACTTTCACTTCCGCCGCCACTCGGCTGCCGCCCGACGAAGTGGATGCGTTGGAGGAAATCGGAAAAATATTAGGGAAGACGGACTGGAATTTCAGGGAGGATCCATGCGGCGGCGAAGCTAGTGGTTGGATATCGGAATCGAATAAATTCGATACTAATTTCGAAAATAATGTCACTTGCGACTGCACCTTCCAAAATAATACCGTCTGTCACGTCACTAACATTCTTCTCAAGGCGCAGAGCCTTCAAGGTACTCTGCCACCGCAAATTGTGAGGTTGCCTTTCCTTGAAGAACTTGATCTCACCCGCAACTATCTCAGCGGTCCAATTCCTCCAGAATGGGGTTCAACCAAGCTTCTCAAAATTTCCCTTCTTGGAAATCGATTGACAGGTCCAATCCCAAAAGCGATTGGAAACATCACCACTCTTCAAGAGTTGGTTTTGGAAATGAATCATTTCTCTGGAAATATACCTCCAGAACTTGGGAATTTGGCCAACTTATCAAGATTACTTCTTACCTCCAACAACTTTTCTGGGGAGCTACCACCTTCACTGGCTAGGATAACGACATTAACGGATTTTCGAATTGGTGACAATAACTTTACAGGACCAATACCTACGTTTCTTCAGAATTGGACGAATCTTGATAAAATAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATCTGAGAATCAGTGACTTGAATGGAGGTTCATCGCAACTTCCACCGCTGAATACTTTGACAAAGTTGAAACACCTGATATTAAGGAGTTGCAGTATAACTGGGATGCTGCCTGACATTCTTGCTGGGTTTTCAGACTTGAGAACATTAGACTTTAGTTTCAACAAAATTACTGGACCAATACCTCACAGCTTTGAAGCGTTGAAAAAAGTTGATAGCATATTTCTTACTGGAAACTTGCTAAATGGATCAGTGCCCAATTGGATGCTAAATCAAGGAAAAAGCATAGATCTCTCTTATAACACATTTACTCAGAGTCAGAACACTGGTTGCCAACCACGAAACTTAAACCTATTTGCAAGCTCTTCAGAGGACAGTAATTCTGGAACAGTATCATGTTTAGGCGCCTGTGAAAAAACATGGTACTCTGTCCATATCAACTGTGGCGGGAATGAAGAATTCATTAACGGAACAACCAAATTTGATGCAAACCCAGAAACTGGAACATCATCATTTTTTCTTCAAGGTAGAACCAATTGGGGATTTAGCAACACTGGTACTTTTATGGACGATGGTCAGACATCAGATGATTTTATTGCAAGAAATTTATCTGCTCTCTCGATGCCAAATCCTGAATTGTACGTCAGGGCACGCATTTCTCCAATCTCTCTTACTTATTATGCACATTGCTTGGGTACTGGAAACTACACATTAAGCCTCCATTTTGCTGAGATAGCATTTACTAATGATGAAACATATAGAAGCCTTGGCAGACGCGTATTTGATGTCTATGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCCGCAGGTGGAATTGGCAAACCTCTTGTAAAGAAATTCACAGTTTCTGTGATTAATGGTACTGTAGAAATCCGCCTATTTTGGGCTGGGAAGGGGTCAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCTTTAATTTCTGCCATTTCTCTTGATCCTGACTTTGAGCCACCATCAGAAGGTGGAAATGCCATTTCTGCCGGTGCAGTGGCTGGAATTGTGGTTGCTGTGGTCTTTGTTATCCTCTTGGTTCTTGGAGTGCTGTGGTGGAGAGGCTGTCTAAGAAAGCCAAGCACACTTGAGCAAGAGTTGAAGGGTCTAGATCTTGGAACAGGTTCATTTTCATTAAGACAAATCAGAGATGCCACTAATAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTTCAAGGGAGTTCTTAATGATGGCAGTGTAATCGCAGTGAAGCAACTTTCTTCAAAGTCAAAGCAAGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTTTGGATGTTGTATTGAAGGAGATCAACTTTTGCTAATCTACGAGTATCTGGAAAATAATAGCCTTGCTCGTGCCTTATTCGGACCTGAAGAATATCAACTGAAATTGGATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAAAGGTTTAGCATATCTTCATGATGAGTCAAGATTAAAGATCGTTCACCGAGATATCAAAGCTACCAATGTTCTTCTCGATAAAAAACTAAACCCTAAGATTTCCGACTTTGGCTTGGCCAGGCTGGATGACGAAGGAAATACACACATCAGCACACGGGTTGCTGGAACCTATGGATACATGGCACCAGAATATGCAATGCGAGGCTACTTAACTGATAAAGCAGATGTTTACAGCTTTGGTGTGGTGGCATTAGAAATCGTGGGTGGTCGAAGCAACACAAGTTTTGGAACCAAGGATGATTGCTTATACCTTCTTGACTATGCTAATCTTTTAAAAGTAAGAGGGGATTTACTAGACCTTGTCGATTCACGGTTAGGCTCTGATTTCAACAAGACAGAGGCGATGACGATGATCAATATCGCTCTTCAATGCACGGACATCAGTGCTGCAGATAGACCATCAATGTCAACAGTAGTTGGGATATTGGAAGGGAAAATTGCCGTGGAGGAGTTGGCTTCAGATCCCAATGTCTCAAAGCAAGATGTGAATGCAATGTGGTGCCAGATTTATCGCCAGAAAGGGAAGACGATGAGCGAAACGCAAAGTATGTTGACATGTGAGAGCGAGAGCGAGACACAAAGTATGTTGATGGATGGACCATGGACTGATTCTTCAATTGCTGACAGTGATTCCCATCCCCATCATGGTTGA | 3027 | 42.29 | MLLARFLAVLFLSSLCFFITFTSAATRLPPDEVDALEEIGKILGKTDWNFREDPCGGEASGWISESNKFDTNFENNVTCDCTFQNNTVCHVTNILLKAQSLQGTLPPQIVRLPFLEELDLTRNYLSGPIPPEWGSTKLLKISLLGNRLTGPIPKAIGNITTLQELVLEMNHFSGNIPPELGNLANLSRLLLTSNNFSGELPPSLARITTLTDFRIGDNNFTGPIPTFLQNWTNLDKIAIQASGLSGPIPSEIGLLTKLTDLRISDLNGGSSQLPPLNTLTKLKHLILRSCSITGMLPDILAGFSDLRTLDFSFNKITGPIPHSFEALKKVDSIFLTGNLLNGSVPNWMLNQGKSIDLSYNTFTQSQNTGCQPRNLNLFASSSEDSNSGTVSCLGACEKTWYSVHINCGGNEEFINGTTKFDANPETGTSSFFLQGRTNWGFSNTGTFMDDGQTSDDFIARNLSALSMPNPELYVRARISPISLTYYAHCLGTGNYTLSLHFAEIAFTNDETYRSLGRRVFDVYVQGKLELKDFNIADAAGGIGKPLVKKFTVSVINGTVEIRLFWAGKGSNAIPVRGVYGPLISAISLDPDFEPPSEGGNAISAGAVAGIVVAVVFVILLVLGVLWWRGCLRKPSTLEQELKGLDLGTGSFSLRQIRDATNNFDAANKIGEGGFGPVFKGVLNDGSVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLFGCCIEGDQLLLIYEYLENNSLARALFGPEEYQLKLDWPTRQKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKKLNPKISDFGLARLDDEGNTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGVVALEIVGGRSNTSFGTKDDCLYLLDYANLLKVRGDLLDLVDSRLGSDFNKTEAMTMINIALQCTDISAADRPSMSTVVGILEGKIAVEELASDPNVSKQDVNAMWCQIYRQKGKTMSETQSMLTCESESETQSMLMDGPWTDSSIADSDSHPHHG* | 1009 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23235696 | 23256570 | - | CsaV3_4G032880.1 | Csa04g02262 | 527872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02262 | 1008 | Pfam | Malectin domain | 402 | 586 | IPR021720 | - | |
Csa04g02262 | 1008 | Gene3D | Phosphorylase Kinase; domain 1 | 631 | 738 | - | - | |
Csa04g02262 | 1008 | SMART | serkin_6 | 663 | 933 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g02262 | 1008 | Gene3D | - | 400 | 589 | - | - | |
Csa04g02262 | 1008 | MobiDBLite | consensus disorder prediction | 982 | 999 | - | - | |
Csa04g02262 | 1008 | Pfam | Leucine rich repeat | 281 | 340 | IPR001611 | GO:0005515 | |
Csa04g02262 | 1008 | PANTHER | CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN | 79 | 977 | - | - | |
Csa04g02262 | 1008 | SUPERFAMILY | Protein kinase-like (PK-like) | 647 | 941 | IPR011009 | - | |
Csa04g02262 | 1008 | Gene3D | Ribonuclease Inhibitor | 195 | 270 | IPR032675 | - | |
Csa04g02262 | 1008 | ProSiteProfiles | Protein kinase domain profile. | 663 | 938 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g02262 | 1008 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 79 | 977 | - | - | |
Csa04g02262 | 1008 | CDD | STKc_IRAK | 669 | 936 | - | - | |
Csa04g02262 | 1008 | SUPERFAMILY | L domain-like | 84 | 347 | - | - | |
Csa04g02262 | 1008 | MobiDBLite | consensus disorder prediction | 982 | 1008 | - | - | |
Csa04g02262 | 1008 | Gene3D | Ribonuclease Inhibitor | 271 | 399 | IPR032675 | - | |
Csa04g02262 | 1008 | Gene3D | Ribonuclease Inhibitor | 45 | 194 | IPR032675 | - | |
Csa04g02262 | 1008 | Pfam | Protein tyrosine and serine/threonine kinase | 666 | 932 | IPR001245 | GO:0004672|GO:0006468 | |
Csa04g02262 | 1008 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 785 | 797 | IPR008271 | GO:0004672|GO:0006468 | |
Csa04g02262 | 1008 | Gene3D | Transferase(Phosphotransferase) domain 1 | 739 | 949 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02289 | Csa-Chr1:20029642 | Csa04g02262 | Csa-Chr4:23235696 | 0 | dispersed | |
Csa04g02258 | Csa-Chr4:23201564 | Csa04g02262 | Csa-Chr4:23235696 | 6.42E-06 | dispersed | |
Csa04g02262 | Csa-Chr4:23235696 | Csa06g02406 | Csa-Chr6:21476372 | 0 | dispersed | |
Csa04g02261 | Csa-Chr4:23231069 | Csa04g02262 | Csa-Chr4:23235696 | 5.25E-19 | tandem | |
Csa04g02262 | Csa-Chr4:23235696 | Csa04g02263 | Csa-Chr4:23267886 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78190 | PF07714 | PK_Tyr_Ser-Thr | 2.20E-46 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02262 | - | - | csv:101221782 | 1829.3 |