Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02263 ATGGTTGGAACTTGGGACATGGATTTTTCTATTTGGAATTTTTTGAGAAATGTTCGTGTTCTTGTTTTGGGAGTTCTTGTTTTGAACTGCTTTTTCAGATTTGGATCCGATGCACAACCTTTACCTGAACAAGAAGTGAGAGCTCTTCAAGCAATATCTACACAACTAAGGAACTTAAACTGGAATGTTAACCAAAATTCTTGCATTGGTGATGGGTTTTTCAATAGAGCTTTCCTTGGTACTGATATTATCAGAGAGGTTAATTGCACTTGCACCACCACTGTTTGCAGAGTCACTAGCATCCGGCTTAAGGGTCTGAATCTAACTGGAACTCTGCCAGCAGCATTTGCAAATCTGACTCAGCTCCAAAAAATAGATCTTACTCGAAACTTAATTTCTGGATCAATCCCTAAAGAGTTTGCTCAAATTCCTCTTGTTGATCTGTCCATGTTGGGAAATCGTCTTAGTGGCCCTATTCCTCAAGAAATTGGTGACATTGCTACACTTGAGCATCTGGTTTTGGAAGACAATCTCCTTACAGGGAATCTTCCCGAGAGCCTCGGGCGACTGAGCCGCTTGCAAAGATTACTTCTTTCTGTAAACAATTTCAATGGAACAATTCCAAGATCTTATGGAAACTTGAAGAACTTGACTGATTTTCGGATAGATGGAAATGATGTATCAGGAAGGCTTCCTGAATTTATTGGCAATTGGACTAAACTTGAGAGATTGGATCTTCAAGGGACTTCAATGGAGACCCCTATTCCTAGAGGCATATCTGACTTGAAAAACTTAACCGAATTGAGGATAACTGATTTGAAGGGACTCCCAACAAGTTTTCCCAATTTGACTCAATTGACATCTTTAAAAGAACTGGTTCTAAGAAATTGCTTAATCCGGGATCGGATTCCTGAATACATTGGACTGTTTAGTGGTTTAAAAACTTTAGATCTAAGCTTCAACGAGTTGAGTGGTCCAATTCCAGATACATTTCAGAATCTAGAGAGAGTTACTCAGTTCTTGTTTTTGACCAACAACTCATTAAGTGGCCAAGTACCAAGCTGGATCTTGAACAGTGAAAGGAGCATAGATTTATCTTACAACAATTTTACAGGGTCCCCTGTTTCAAGTTGTCAACAATCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAATGAATGAAACTGTTTCTTGGTGCTTGAGAAAGGATCTCCCTTGCGCAAGAGAAAACCGATTTCATTCCTTGTTCATAAATTGTGGAGGACAAAGGATGGAGGTTGATGGTAATGATTATGAAGAGGATGTAACTCCAGGTGGAAAATCCAATTTCCTTTCTTTCTCTGACAGATGGGCTTATAGCAGTACTGGTGTTTTCTTGGGAGATGAGAATGCTAATTACAGAGCAACAAGTACCAATTCATCAATCCCGAACATCTACCAAACCGCTCGACTCGCACCTCTTTCGCTCAAGTACTATGGACTTTGCTTAAGAAGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTATACATCTGATCAAACATTTAGCAGCTTGGGAGAGCGCATATTTGATATCTCAATTCAAGGAAAATTGGTTCAAAAGGATTTTAACATAATGGAGAAAGCTGGTGGTGTTGGGAAAACCTTTATTCTAGAAGAGTCTAATATTTTGGTAAATGGAAGTACTCTTGAGATTCATTTATATTGGGCTGGGAAAGGAACTACTGCTATTCCAGACAGAGGGGTGTATGGACCTTTGATATCTGGCATTACAGTCACACCAAACTTTGATGTGGAGCCTGGAACGCTATCAGCTGGAGCTATTGCTGGGATTGTTGTTGGTAGTTTTGTGTTTGTTGTGTTGGTTTTGGCTGTTCTTAGATGGAAAGGTTATTTGGGTGGAAAGGAGACTGAAGACAGTGAGTTGAAGGCCCTAGATTTACAGACAGGTTATTTCAGTTTGAGACAAATCAAAACAGCCACTAACAACTTTGACCAGACGTATAAGATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGTGTACTTTCGGATGGTACTTCGATTGCAGTAAAGCAACTATCCGCTAAATCAAGACAGGGAAACCGTGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATAGAAGGAAACCAGTTATTGCTTGTTTATGAGTATCTAGAGAATAATAGTCTTGCTCGTGCTCTTTTTGGCGCCAAGGAGCACCAACTACACTTGGATTGGGTGATACGGATGAAGATATGCTTGGGAATAGCTAAGGGATTGGCTTACCTTCATGAAGAATCTGTCTTGAAAATTGTTCATAGAGATATTAAAGCTACCAATGTGTTACTTGATAAAAATTTGAACGCCAAGATTTCTGACTTTGGATTGGCTAGACTTGATGAAGAGGAGAACACTCATATCAGCACAAGAATTGCTGGCACAATAGGTTACATGGCTCCTGAGTACGCAATGCGAGGCTACTTAACTGATAAAGCAGATGTTTATAGCTTCGGAGTGGTGGCTTTGGAGATTGTTAGTGGAAAAAGTAACACAAACTACCGACCAAAAGAAGAATTTGTTTATCTTCTCGACTGGGCCTATGTTCTACAAGAGCAAGGAAACCTTCTCGAACTTGTTGATCCGAATCTCGACTCAAATTACCCGAAAGAAGAGGTGATGCGGATGATTAATATAGCTCTGTTATGCACAAATCCATCACCAACTCTTAGGCCATCAATGTCTTCAGTGGTTAGTATGCTTGAAGGCAAAATTGCAGTCCAAGCGCCTATCATAAAGCGAGACACAGTCGATCAAGAAGCGCGGTTCAAAGCATTCGAAAGGCTGTCACACGATAGCATAACAAGCATTTCAACATCATCACAAGGGATTCCAATGCAAAAAAGTATGTTGCTTGATGGACCATGGGCTGATTCCACTACTTCTTCTACTCAAAACAAGGATGAAACTGAACGTTATTCTTCAACCAGAAACCTCCTTTAA 3057 40.04 MVGTWDMDFSIWNFLRNVRVLVLGVLVLNCFFRFGSDAQPLPEQEVRALQAISTQLRNLNWNVNQNSCIGDGFFNRAFLGTDIIREVNCTCTTTVCRVTSIRLKGLNLTGTLPAAFANLTQLQKIDLTRNLISGSIPKEFAQIPLVDLSMLGNRLSGPIPQEIGDIATLEHLVLEDNLLTGNLPESLGRLSRLQRLLLSVNNFNGTIPRSYGNLKNLTDFRIDGNDVSGRLPEFIGNWTKLERLDLQGTSMETPIPRGISDLKNLTELRITDLKGLPTSFPNLTQLTSLKELVLRNCLIRDRIPEYIGLFSGLKTLDLSFNELSGPIPDTFQNLERVTQFLFLTNNSLSGQVPSWILNSERSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTMNETVSWCLRKDLPCARENRFHSLFINCGGQRMEVDGNDYEEDVTPGGKSNFLSFSDRWAYSSTGVFLGDENANYRATSTNSSIPNIYQTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTSDQTFSSLGERIFDISIQGKLVQKDFNIMEKAGGVGKTFILEESNILVNGSTLEIHLYWAGKGTTAIPDRGVYGPLISGITVTPNFDVEPGTLSAGAIAGIVVGSFVFVVLVLAVLRWKGYLGGKETEDSELKALDLQTGYFSLRQIKTATNNFDQTYKIGEGGFGPVYKGVLSDGTSIAVKQLSAKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGAKEHQLHLDWVIRMKICLGIAKGLAYLHEESVLKIVHRDIKATNVLLDKNLNAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPNLDSNYPKEEVMRMINIALLCTNPSPTLRPSMSSVVSMLEGKIAVQAPIIKRDTVDQEARFKAFERLSHDSITSISTSSQGIPMQKSMLLDGPWADSTTSSTQNKDETERYSSTRNLL* 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23267886 23277531 + CsaV3_4G032890.1 Csa04g02263 527873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02263 1018 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 387 1002 - -
Csa04g02263 1018 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 302 - -
Csa04g02263 1018 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 303 358 - -
Csa04g02263 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Csa04g02263 1018 SMART serkin_6 668 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02263 1018 Pfam Protein tyrosine and serine/threonine kinase 672 939 IPR001245 GO:0004672|GO:0006468
Csa04g02263 1018 Gene3D - 414 599 - -
Csa04g02263 1018 PANTHER - 387 1002 - -
Csa04g02263 1018 PANTHER - 303 358 - -
Csa04g02263 1018 PANTHER - 76 302 - -
Csa04g02263 1018 SUPERFAMILY L domain-like 89 372 - -
Csa04g02263 1018 SUPERFAMILY Protein kinase-like (PK-like) 652 950 IPR011009 -
Csa04g02263 1018 Gene3D Phosphorylase Kinase; domain 1 636 743 - -
Csa04g02263 1018 ProSiteProfiles Protein kinase domain profile. 668 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02263 1018 MobiDBLite consensus disorder prediction 989 1018 - -
Csa04g02263 1018 CDD STKc_IRAK 674 941 - -
Csa04g02263 1018 Gene3D Ribonuclease Inhibitor 235 403 IPR032675 -
Csa04g02263 1018 Gene3D Transferase(Phosphotransferase) domain 1 744 960 - -
Csa04g02263 1018 Pfam Malectin domain 416 594 IPR021720 -
Csa04g02263 1018 Gene3D Ribonuclease Inhibitor 167 234 IPR032675 -
Csa04g02263 1018 Gene3D Ribonuclease Inhibitor 45 166 IPR032675 -
Csa04g02263 1018 MobiDBLite consensus disorder prediction 992 1018 - -
Csa04g02263 1018 Pfam Leucine Rich Repeat 313 334 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00828 Csa-Chr4:5796762 Csa04g02263 Csa-Chr4:23267886 0 dispersed
Csa04g02263 Csa-Chr4:23267886 Csa06g02406 Csa-Chr6:21476372 0 dispersed
Csa04g02262 Csa-Chr4:23235696 Csa04g02263 Csa-Chr4:23267886 0 tandem
Csa04g02263 Csa-Chr4:23267886 Csa04g02264 Csa-Chr4:23281506 5.77E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78191 PF07714 PK_Tyr_Ser-Thr 1.30E-51 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02263 - - csv:101222014 1951.79