Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02264 ATGGACTTTCCTAAGAAATGTGTTCGTGTTCTTTCTGTATTGCTGCTTTTCATCTGCTTCTTGGACTTTGGATCCTATGCCCATCCTTTACCCGAACAGGAAGTCTCTCTTAGCGCTGACAGACGACTAAAAGGTCTTAATCTAGTTGGAGTTCTACCCGTAGAATTTGCAAATCTAACTCAACTTCAAGAATTAGATCTGACTTACAATCTTATTAATGGATCAATCCCAAAAGACTTTGCTCGAATTCCTCTTCTTAAATTTTCCATAATTGGAAACCGACTTAGTGGTGAGATTCCCCCAGAAATTGGTAATATTGCTTCACTTGAGGAACTGATCTTAGAAGACAATCAGATTAGAGGAACTCTTCCAAAGACTCTCGGAAAACTAATCCACTTGCGTAGACTACAGGTTTCTTCGAATAATATCAGAGGGTTGATTCCACAATCTTTTTGGAACTTGAGGAACTTGAGTGACTTTCGGGTGGATGGAACTAATATATCAGGAAACATACCTGAATTTATTGGCAATTGGACCAATCTTCAAACATTGTATATTCAAGGAACTTCCATGGAAAACCCCATTCCTACTGCCATATCCCACTTGAAAAACTTAACCCAATTGGTAATAAGTGATTTGAAGGGAGGCACTGTAAAGTTCCCCAATTTGAGCCAATTGACATCTTTACAAAGATTGGTCTTGAGAAATTGTTTAATCGAGGATCGTATCCCTGAATACATTGGATCATTTAATGATTTAAGAATTTTAGATCTAAGCTTCAACAGATTAAGTGGTTCAATTCCAGACACATTTCAGAATCTATTTGTCCAACAAGAAACTGAGTCCATGTTTCTAACTAACAACTCGTTAAGCGGGCAAATACCGAGTTGGATTGCTGTAATAAGTAGCAGGAACATTTACTATGTCAAGCTTCATTTTGCTGAAATTTTGATTACTGCTGACCAAACTTATACCAGCCTCGGGAGGCGTCTTTTCGATATCTCAATCCAAGGAAAGTTGATTAAAAAGGACTTTAACATAATGGAAGAAGCTGGAGGTGCTGGTAAAGAGTTTACTTTAGAAGTGCCTGATGTTATGGTCAATAGTACTCTTGAGATTCATTTGTATTGGGCTGGTAAAGGAACAATTTACATTCCATACTCGGGGGTGCATGGACCTCTAATATCTGCAATCACTGTCACACCAAATTTCCACGTTAAAACTAATGTGAAAACTAAAAGGCTAACGGCTGGAGCTATTGCTGGCATTGTTGTTGGTGTTTTCATCTTTGTCTTCCTAGTACTTGTGCTTCGATGGAAAGGTTATTTAGGGGGAAAGGACACTGAAGACGACGAACTTCGAGACTTGAAATTACAGACAAGTTATTTCAGTTTAAGACAAATAAAAGCAGCCACCAACAACTTTGACTCTGCAAATAAAATTGGGGAGGGAGGCTTTGGTCCTGTCTACAAGGGAGTACTATCAGATGGAACTTCCATTGCTGTAAAACAACTATCTTCTAAATCAAGACAAGGGAATCGTGAGTTCATCACAGAAGTTGGGATGATTTCTGGATTACAACATCCAAACCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAAGCAATTGTTGCTTATTTATGAGTATTTACTGAACAATAATCTTGCTCGTGCACTTTTTAGCCCTGAGAAGCATTCTTTGAATTTGGATTGGCCAATAAGAATGAAGATATGTGTGGGAATAGCAAAGGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCATAGAGATATAAAGGCTACTAATGTTCTACTTGATGAAAACTTGAATGCCAAGATCTCCGACTTTGGATTGGCTAAGCTTCATGAAGAGGAGAACACTCATATTAGCACAAGAATTGCAGGCACAGTAGGTTATATGGCTCCTGAATACGCAATGAGGGGTCATTTAACTCACAAAGCTGATGTTTATAGTTTTGGAGTTGTGGCGTTAGAGATTGTTAGTGGAAAAAGTAATACGAATTATAGGCCAAAAGAAGAGTACGTTTATCTTCTTGATTGGGCTTGTGTTCTACAAGAGGAAGGGAACTTACTTGAACTTGTTGATCCAAATCTTGGCCCTCATTACTCAAAAGAGGAGGTCATGAGGATGCTTCATATCGTTCTCATATGCACAAACTTGTCTCCAACTCTCAGACCATCCATGTCTTGTGTGGTTAGCATGCTTGAAGGTAAAACTGCAGTTGAAGTATCGAACATCAAGCGCAACACAGCTGAACGAGATGCAAGGTTCAAAGCCTTTGATCGGAAGTTGTCACGAGATAGCAGGACAAGCATTTCAACCTCACAGCAATTGCAAGGTTCATCATCTTCTTCTACTCAAAACAAAGATGATGCTCGGGAGTATTCAACAACGATAAGCCTCCTTTCAGAGTCATCCAAATGA 2457 38.83 MDFPKKCVRVLSVLLLFICFLDFGSYAHPLPEQEVSLSADRRLKGLNLVGVLPVEFANLTQLQELDLTYNLINGSIPKDFARIPLLKFSIIGNRLSGEIPPEIGNIASLEELILEDNQIRGTLPKTLGKLIHLRRLQVSSNNIRGLIPQSFWNLRNLSDFRVDGTNISGNIPEFIGNWTNLQTLYIQGTSMENPIPTAISHLKNLTQLVISDLKGGTVKFPNLSQLTSLQRLVLRNCLIEDRIPEYIGSFNDLRILDLSFNRLSGSIPDTFQNLFVQQETESMFLTNNSLSGQIPSWIAVISSRNIYYVKLHFAEILITADQTYTSLGRRLFDISIQGKLIKKDFNIMEEAGGAGKEFTLEVPDVMVNSTLEIHLYWAGKGTIYIPYSGVHGPLISAITVTPNFHVKTNVKTKRLTAGAIAGIVVGVFIFVFLVLVLRWKGYLGGKDTEDDELRDLKLQTSYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFITEVGMISGLQHPNLVKLYGCCIEGKQLLLIYEYLLNNNLARALFSPEKHSLNLDWPIRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDENLNAKISDFGLAKLHEEENTHISTRIAGTVGYMAPEYAMRGHLTHKADVYSFGVVALEIVSGKSNTNYRPKEEYVYLLDWACVLQEEGNLLELVDPNLGPHYSKEEVMRMLHIVLICTNLSPTLRPSMSCVVSMLEGKTAVEVSNIKRNTAERDARFKAFDRKLSRDSRTSISTSQQLQGSSSSSTQNKDDAREYSTTISLLSESSK* 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23281506 23289383 + CsaV3_4G032900.1 Csa04g02264 527874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02264 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Csa04g02264 818 MobiDBLite consensus disorder prediction 780 818 - -
Csa04g02264 818 SMART LRR_typ_2 106 129 IPR003591 -
Csa04g02264 818 SMART LRR_typ_2 250 273 IPR003591 -
Csa04g02264 818 SMART LRR_typ_2 59 82 IPR003591 -
Csa04g02264 818 SMART LRR_typ_2 130 153 IPR003591 -
Csa04g02264 818 Gene3D Transferase(Phosphotransferase) domain 1 552 773 - -
Csa04g02264 818 Pfam Malectin domain 289 398 IPR021720 -
Csa04g02264 818 ProSiteProfiles Protein kinase domain profile. 475 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02264 818 Pfam Leucine Rich Repeat 253 274 IPR001611 GO:0005515
Csa04g02264 818 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Csa04g02264 818 SMART serkin_6 475 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02264 818 Pfam Protein tyrosine and serine/threonine kinase 478 745 IPR001245 GO:0004672|GO:0006468
Csa04g02264 818 Gene3D Ribonuclease Inhibitor 32 315 IPR032675 -
Csa04g02264 818 CDD STKc_IRAK 481 748 - -
Csa04g02264 818 PANTHER - 307 792 - -
Csa04g02264 818 PANTHER - 27 242 - -
Csa04g02264 818 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 307 792 - -
Csa04g02264 818 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 242 - -
Csa04g02264 818 MobiDBLite consensus disorder prediction 773 818 - -
Csa04g02264 818 SUPERFAMILY L domain-like 43 303 - -
Csa04g02264 818 SUPERFAMILY Protein kinase-like (PK-like) 458 747 IPR011009 -
Csa04g02264 818 Gene3D Phosphorylase Kinase; domain 1 445 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02264 Csa-Chr4:23281506 Csa06g02406 Csa-Chr6:21476372 1.23E-65 dispersed
Csa04g02263 Csa-Chr4:23267886 Csa04g02264 Csa-Chr4:23281506 5.77E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78192 PF07714 PK_Tyr_Ser-Thr 2.60E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02264 - - cmos:111446321 810.061