Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02292 ATGTCGCATTCTGGGAATCCCATTTCCGACCTTCGTTTTGATCATCTTTCCGATCGCTTTCGAGATTCTGTGAGCTGTGAAGTAAACAAACCAGACTTTCGTGAGTTAGATCTGGGTTCCCCTGTTTCGCCATTGCGTACTCGTCACCAGACTGGTGGCGGCCCCGCTGCCAGTAGTAGTTCCAGCTCCTCTGGATCGGTTTCTGGCCGGAATGGACCCAACCCAGTTGCTAAAAGATCCGATTCAGGTCCTAACAATCACTCCGGTGAACTTTCTGGGTCTAGTGAGAGTAGCCCTACCGCCGCGGAGAGCCTCCGATCCATCGGAACCCCTAAGAATTTCAAGTCGGGTCACAATAGATCCGATTCCGCTTCTAATCATCCGCTAATCTACTCGGGTCAGTCTCAAAGCTCTGTTACTTCTCCCTCCAATGTGCTTCCCACTGGCAATATTTGCCCTTCAGGAAGGATCTTGAAACCGAGCATGCCGTCTACGAATCGGAGCTCGAGGACTGACGTTTTGGGTTCTGGGTCGGGAAATTATGGCCATGGGAGCATAATGCGGGGACTCGGCGGTGTTAAAACTGGCGCCGTTGAATCGATTAGTAACGCCTGTTCGAGGGTCGGTGGTGTTGGTGGTGGAGACTCGTTGAAGAGGGCGAAACAGAGTGGGGATCCGGAAGAGTTGAAGAGAGCTGGAAATGAGCAGTACAAAAAGGGACATTTTGCTGAGGCTTTGAGTCTTTATGATCGAGCCATTGCAATTTCTCCGGCCAATGCAGCTTACCGGAGTAACCGAGCGGCTGCCTTAACTGGTCTAGGACGGCTTGGGGAGGCTGTAAGCGAGTGCGAGGAGGCGGTGAGATTGGATCCCAATTATATTCGGGCTCATCAGCGTTTGGCATCTCTGTTTCGTAGGTTAGGACAGGTAGAGAATGCTAGGAAACACCTTTGTTTTCCCGGTGTTCAGCCAGATCCAAATGAGTTGCAAAGATTGCAGGTAGTAGAGAGGCATATAAGTAGATGTGGGGACGCCCGTCGTGTTAGAGATTGGAAAAGTGTATTGAAGGAGGCAGATGCTGCAATTTCTGCTGGTGCAGATTCTTCACCTCAGCTGTTTATGAGTAGAGTGGAAGCTCTTTTAAAGCTTCATCAGATTGAAGATGCAGAATCCAGCCTATTTAGTGTTCCGAAATTACATCAGTCGACCAACTCGTGCTTACAGACAAAGTTTTTTGGAATGCTTTCAGAAGCATACTCTCACTTCATTCACGCCCAAATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTACGGCTGCTGAGAAAGCAGGGCAGATTGATGCTCGGAATGTTGAAGTGGCAGTCCTGCTTAATAATGTGCGCTTGGTTGCTAGAGCTCGTACTCGGGGCAATGATCTTTTTAAATCAGAAAGGTATACAGAAGCTTGCTCAGCTTATGGGGAAGGTCTGAAGCTCGACCCTTCGAATTCAGTTCTCTACTGCAATCGGGCAGCTTGTTGGTTTAAACTTGGGGTGTGGGAGCGGTCCATCGAAGATTGCAATCAAGCATTACTTATCCAACCAACTTACACGAAAGCCCTCCTTCGAAGGGCTGCCTCAAATAGTAAGCTTGAAAAGTGGGAGGAGGCTGTAAGAGATTATGAAGTTTTGAGGACGGTGCTTCCAGATGACAATGAAGTTGCTGAGTCTCTATTTCATGCTCAAGTTGCATTAAAAAAATCTAGGGGGGAAGAAGTTCATAATCTGAAATTTGGTGGCGAAGTTGAGGAAGTGTCGAGCCTCGATCAGTTCAGAGCTGCCGTATCGTTTCCAGGCGTCACTGTGGTTCATTTCAAAGCAGCGTCTGATTTACAATGCAAGCAAATATCGCCATTTGTGGATATTCTTTGTCGTCGCTACCCTTCCATTAATTTCCTCAAGGTGAATCTAGAAGAAAGTCCAGCTATTGCAGATACTGAAAACGTTAGGATTGTACCAACATTCAAGATTTACAAAAGCGGCAATCGAGTGAAAGAGATCATATCTCCGACTCGCGACATGTTGGAGCATTCGGTGAGATATTATAGCTTATAG 2097 47.54 MSHSGNPISDLRFDHLSDRFRDSVSCEVNKPDFRELDLGSPVSPLRTRHQTGGGPAASSSSSSSGSVSGRNGPNPVAKRSDSGPNNHSGELSGSSESSPTAAESLRSIGTPKNFKSGHNRSDSASNHPLIYSGQSQSSVTSPSNVLPTGNICPSGRILKPSMPSTNRSSRTDVLGSGSGNYGHGSIMRGLGGVKTGAVESISNACSRVGGVGGGDSLKRAKQSGDPEELKRAGNEQYKKGHFAEALSLYDRAIAISPANAAYRSNRAAALTGLGRLGEAVSECEEAVRLDPNYIRAHQRLASLFRRLGQVENARKHLCFPGVQPDPNELQRLQVVERHISRCGDARRVRDWKSVLKEADAAISAGADSSPQLFMSRVEALLKLHQIEDAESSLFSVPKLHQSTNSCLQTKFFGMLSEAYSHFIHAQIEMALGRFENAVTAAEKAGQIDARNVEVAVLLNNVRLVARARTRGNDLFKSERYTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGVWERSIEDCNQALLIQPTYTKALLRRAASNSKLEKWEEAVRDYEVLRTVLPDDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEEVSSLDQFRAAVSFPGVTVVHFKAASDLQCKQISPFVDILCRRYPSINFLKVNLEESPAIADTENVRIVPTFKIYKSGNRVKEIISPTRDMLEHSVRYYSL* 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23465791 23470303 - CsaV3_4G033180.1 Csa04g02292 527902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02292 698 Pfam Tetratricopeptide repeat 232 293 - -
Csa04g02292 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 14 696 - -
Csa04g02292 698 CDD TRX_family 603 682 - -
Csa04g02292 698 MobiDBLite consensus disorder prediction 26 181 - -
Csa04g02292 698 SUPERFAMILY TPR-like 225 453 IPR011990 GO:0005515
Csa04g02292 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 14 696 IPR044534 -
Csa04g02292 698 Pfam Thioredoxin 603 686 IPR013766 -
Csa04g02292 698 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515
Csa04g02292 698 SUPERFAMILY Thioredoxin-like 501 690 IPR036249 -
Csa04g02292 698 MobiDBLite consensus disorder prediction 212 236 - -
Csa04g02292 698 MobiDBLite consensus disorder prediction 159 178 - -
Csa04g02292 698 MobiDBLite consensus disorder prediction 44 150 - -
Csa04g02292 698 SMART tpr_5 418 451 IPR019734 GO:0005515
Csa04g02292 698 SMART tpr_5 226 259 IPR019734 GO:0005515
Csa04g02292 698 SMART tpr_5 532 565 IPR019734 GO:0005515
Csa04g02292 698 SMART tpr_5 498 531 IPR019734 GO:0005515
Csa04g02292 698 SMART tpr_5 464 497 IPR019734 GO:0005515
Csa04g02292 698 SMART tpr_5 260 293 IPR019734 GO:0005515
Csa04g02292 698 MobiDBLite consensus disorder prediction 220 236 - -
Csa04g02292 698 Gene3D Tetratricopeptide repeat domain 224 582 IPR011990 GO:0005515
Csa04g02292 698 Gene3D Glutaredoxin 583 694 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02292 - - - csv:101208569 1325.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00572 Csa-Chr2:4054096 Csa04g02292 Csa-Chr4:23465791 1.32E-07 dispersed
Csa04g01848 Csa-Chr4:18160546 Csa04g02292 Csa-Chr4:23465791 2.54E-128 dispersed
Csa04g02292 Csa-Chr4:23465791 Csa07g00498 Csa-Chr7:3576371 0 dispersed
Csa04g02666 Csa-Chr4:25946715 Csa04g02292 Csa-Chr4:23465791 4.29E-11 dispersed
Csa04g02292 Csa-Chr4:23465791 Csa06g01370 Csa-Chr6:11645258 2.71E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02292 Csa_Chr04 FPKM 0.293135 0.64966 0.796919 0.971134 1.481849 1.430946 2.080077 2.15721 1.950895 3.235585