Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02295 ATGGATTTCCAGGATGATGGCTTTGAGGGATCTGCAAACGAAGAAATTATTTTTAGGGAGGTTTTCTTTGGGAATGGTTCTAGCCATTCCAATAAGAGGTGTCCTCACAAGGCATTTGGTTATGAACACGGGCCCTGCAAAATTAATGATGCATCTTTATGTTCAAGTAGTGAACCCTCAGCAGTCTCCATTTATTCATACTCAAGAAATATGAAGCTTGATGAATGTTACAATGCTACTGAGAATATTAGGACCGGTTCTGCATCTAATAGTCTTCCATGCAAAAGGATTTCAGTGGAAGGTGACGATGGGAATGCAAGTGGCAAGCGAATTAAAGTTTCAACTGATGAAGCTTCTGATTCTGTACCTAATCTAGTTAAGCTTAAACAATCATCAGATAGTATAAGAGAACCTGTTTCTGCTAATTGCTCTCCAGCCGAGGAATGTGACCCTGAATCATTTACATTCCACATTGTAGAATCGTCTAGACAGGGAATTATCTCAAGTTGCTATCGGCTAAGGGACCTTGTAGAAATGGACAGTAATTTGGCTGATCCTGATGCCGTCAAACAGACATCATTGAATTTAGAAGGTCATGGTGAACCCAATATGGTGAATAAAGTTAGTGCTTCACCTGTTTCCCAAGAGAGCTCCATGACCAGGCTGTTGGTAGCAAATCCTTCTGATAAAATCAGCGAGAAGTTTAGATCTCCACTACATCTGGAGGTAGGACAAATGAAATCTCTATGCCCAGAACTGGATGCTTCCTTGAAGACAGATTTGAGTAGGGATCCCCGTCCTCTTCTCCACTATCATGTTGTTCACCTATTTATTGCAGCTGGATGGTCTATTGAAAGGGTCAAAAGACCTTGCAGGCGTTATATGGAAACAGTTTACAGATCACCCCAGGGAAGAGCCTTTCGTGAATTTTCCAAGGCTTGGAGGTTCTGTGGCGAACTTCTATTTGCTGATAGATGTAGTTTTGTAAAGGATGTTGAAAGCAAAGAATGGACTGGGATTCATCAATTCTTATTTGATCTTTCTGACACATTGTTACACATTGGGAAGGAAATGAATCAATTAGGGGCCACAACTTCATTGGCTAATTGTTGGGTTATTCTTGACCCCTATGTGGTGGTTGTGTTCATCGACAGAAAGATTGGTCCACTTAGGAGGGGAGATTTAGTTAGAGCTACCTGTAGTGTTGGGATTAATGGGAGCAGTAAGACCGATGGTTTTGTGACATTAATAAATGAAGACAATGGTTTTCGTAAGCTGTCTGCTGACAAAAATGCATCACCAGTACATGATAATTCACCCTCTGCCAAGAGTGCATTGACAGAGGCCCCACTAAAAGATCTTGACGAGGGCAATTGTGCTTTTGATGAGCAAACCTGTGATACAAGTTTCTCCAATTACTACGGGCACACAGAAGATGGAACAACAAAATTTCCGACAAGGGTCTCTAATTATGGCCCCAATTTGGAGAATGGTCTGAATTGCACGGGCAGTCATTTTAATGAACCTGGGAACAAAATAGAGTCTGAGGATTTAACTTCATCACCCGCTTATTTTTCACGTTCCACCTGCAAACCTAGATGTCTGGGTGATGGTCCCGTTCCATCTGGAAATTCAGATAACGTTGTCAGAATTTCTGGCCTTGCATCTCCTGATGAGGATAGCACTTTGTATTGTTCAGATGAACAGAGCTCTGAAAATCATGTTGAGAACCCTAATGAAATGATGAAAAATGTACTAACATGTTCCCTAGTGGAAGGAAAAAAACTGGAAGTCCCACTCGGTAAAGCAGAAAATAATTTGGAAGAATCTCTGAACGACTGTCCAAACTATACAAGTGACGGTCTATCTCATTCTTGTGCCTCAGGGGTTGTACAGAAGTCTTCACAAAATGAAGAAGGTGGGCTGCACTTTTCAGCTTCAATGTTCAAAACAGAGGATAAAGTTTCTGCCATACATTCTATTTTGAAGAAGAAAGGGCGCCGGAAGTGTAAAAAGATATCTGAAATTAAACCTACCTTGCCACCTCAGATTGATATTGTGAGTGTGGCTCCTGGAAATAAAACTGAGTTTTGGGATATTGATGGGACTTGCTCTCAGTTAGATATGATAGAAGATCAGAAGTCCCATATAGCCGATACTAAAAATGTGGACAGTCATGAGAAGAACTTGTCTCTCAGTCCTATCTCATGCCACTCTGAGAGGAAAGGTTCAAAACTCAAAAAGAATTTTGACAGTCATAAAGGTTCAAAAACCAGAAAGAAGAAACTGAATGAATGTCAAATTGAAGATGATGATCTATTAGTTTCAGCCATTATTAGAAACAAAGACGTCAGTTCAAGTGCTGCTGGATTTTCCCATGTAAGAAAATACTTCAAATCTAGAGCGAAAATGAACCGCAAAAGTCAAAAGAGTAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAGTGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCCCTAGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGATATAATCCAATACCAAAGCCCCAAGGATGGTAGTGTAGTTAAATATGGTAGAATCACTGGAGATGGCATCATTTGCAATTGCTGCAGTGATATACTCTCAATATCTGAATTTAAAAGCCATGCAGGTTTCAAATTTAATCGTGCTTGCTCGAATCTTTTTTTGGACTCTGGGAGGCCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAATATAAGACAAGGAAAAGTAAGACCAGAACAGTGGAAGTTGATGAAGATGATCGAAATGATGATTCGTGTGGTATTTGTGGTGATGGTGGAGAACTAATATGCTGTGATAATTGCCCCTCTACATTCCATCATTCTTGTTTGTCAATTCAGGAACTCCCTGAAGGCAACTGGTATTGCTTAAACTGTACTTGCCGGATATGTGGTGATTTGGTGAATTTTGAAGAGATTTCAAGTTCTTCTGATGCGCTAAAATGTTTTCAGTGCGAACAAAAGTATCATGGACAATGCCTGAAACAAAGAGACATCGATTCTGGAGTAGAGTCTCATATTTGGTTTTGCAGCGGTAGTTGTCAGAAGATTTATGCAGCTCTTCAATCACAACTTGGATTGACTAATCAGTTTGCAAATGGGTTTTCATGGACACTTCTTAGATGCATTCATTACGACCAGAAAATTCTGTCTACGGCACGGTTAGCTATGATGGCAGAATGCAATTCCAGATTAGTAGTGGCTCTTACCATTATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGAACAGGAATTGATATGATACCACATCTGGTGTACAGCTGGAAGTCTAGTTTTCCTCGTCTGGACTTTCATGGATTCTACACTGTGATACTTGAGAAAGATGATGTGCTGCTATGTGTAGCTTCTATCAGGGTACATGGATCAGAACTGGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGGCGCCAGGGAATGTGTAGGCGTCTACTGAATGCAATAGAGGAGATGCTGATGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTTTAGTGGAGACATGGACCGAAGGTTTTGGCTTTGTAACTGTGGAAAATGAGGAGAAACAAAGTCTTCACAAGTTCAATTTGATGGTGTTTCCCGGAACAGTACTCCTAAAAAAGGCCCTGTATGTAAGTGGCCAAACTACAGAGACAACAGTAGGAATTCATTCCGGAGTACAACTTGACACCGATGCGAAACAGCAATGCGATTCCTGTGAACCATGTCCTAGAATGGAAATGAAATGTTCAAAATATCAAGAATTACAAGAACCCAATGGTGAAAAGATTAAGGACGATCATGAAGCAGATCCAGCTCCTCCAATCGATTCATCTACGTTGCAGTTGGTTGAATCAAATGGATTGGATATTTCTCCAGGACAGAAGCCTGTTGAGTCAAACTGTTGCACTGACATAGTTGGTGCCACAACCGAAACCTGCACCCAGGAGGCAAAAAAGCTGTTAAAAGTAGAAGTTGGCGTAGAACGCGACATTCAGCTTTCGGAAGGAAAGAGCTGGGATGAAGGAGTTCATGGAGCCACTATGACTAGATTTGTAGAACCTGTTGTTCTAACTTAG 4182 40.96 MDFQDDGFEGSANEEIIFREVFFGNGSSHSNKRCPHKAFGYEHGPCKINDASLCSSSEPSAVSIYSYSRNMKLDECYNATENIRTGSASNSLPCKRISVEGDDGNASGKRIKVSTDEASDSVPNLVKLKQSSDSIREPVSANCSPAEECDPESFTFHIVESSRQGIISSCYRLRDLVEMDSNLADPDAVKQTSLNLEGHGEPNMVNKVSASPVSQESSMTRLLVANPSDKISEKFRSPLHLEVGQMKSLCPELDASLKTDLSRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETVYRSPQGRAFREFSKAWRFCGELLFADRCSFVKDVESKEWTGIHQFLFDLSDTLLHIGKEMNQLGATTSLANCWVILDPYVVVVFIDRKIGPLRRGDLVRATCSVGINGSSKTDGFVTLINEDNGFRKLSADKNASPVHDNSPSAKSALTEAPLKDLDEGNCAFDEQTCDTSFSNYYGHTEDGTTKFPTRVSNYGPNLENGLNCTGSHFNEPGNKIESEDLTSSPAYFSRSTCKPRCLGDGPVPSGNSDNVVRISGLASPDEDSTLYCSDEQSSENHVENPNEMMKNVLTCSLVEGKKLEVPLGKAENNLEESLNDCPNYTSDGLSHSCASGVVQKSSQNEEGGLHFSASMFKTEDKVSAIHSILKKKGRRKCKKISEIKPTLPPQIDIVSVAPGNKTEFWDIDGTCSQLDMIEDQKSHIADTKNVDSHEKNLSLSPISCHSERKGSKLKKNFDSHKGSKTRKKKLNECQIEDDDLLVSAIIRNKDVSSSAAGFSHVRKYFKSRAKMNRKSQKSSCKLLLRSLGSGEKNYKDGKWYALGARTVLSWLLDAGVISSNDIIQYQSPKDGSVVKYGRITGDGIICNCCSDILSISEFKSHAGFKFNRACSNLFLDSGRPFMLCQLQAWSTEYKTRKSKTRTVEVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSIQELPEGNWYCLNCTCRICGDLVNFEEISSSSDALKCFQCEQKYHGQCLKQRDIDSGVESHIWFCSGSCQKIYAALQSQLGLTNQFANGFSWTLLRCIHYDQKILSTARLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSELAEMPLIATCSKYRRQGMCRRLLNAIEEMLMSFKVKKLVIAAIPSLVETWTEGFGFVTVENEEKQSLHKFNLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAKQQCDSCEPCPRMEMKCSKYQELQEPNGEKIKDDHEADPAPPIDSSTLQLVESNGLDISPGQKPVESNCCTDIVGATTETCTQEAKKLLKVEVGVERDIQLSEGKSWDEGVHGATMTRFVEPVVLT* 1394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23497531 23510992 - CsaV3_4G033210.1 Csa04g02295 527905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02295 1393 PANTHER INCREASED DNA METHYLATION 1 2 1321 IPR031086 -
Csa04g02295 1393 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1081 1245 IPR000182 GO:0016407
Csa04g02295 1393 PANTHER PHD FINGER FAMILY PROTEIN 2 1321 - -
Csa04g02295 1393 Gene3D - 1118 1232 - -
Csa04g02295 1393 SUPERFAMILY FYVE/PHD zinc finger 925 989 IPR011011 -
Csa04g02295 1393 Pfam Tify domain binding domain 870 920 IPR032308 -
Csa04g02295 1393 Pfam PHD-finger 948 989 IPR019787 -
Csa04g02295 1393 ProSiteProfiles Zinc finger PHD-type profile. 945 990 IPR019787 -
Csa04g02295 1393 CDD PHD2_CHD_II 947 987 - -
Csa04g02295 1393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 931 1007 IPR013083 -
Csa04g02295 1393 SMART PHD_3 947 988 IPR001965 -
Csa04g02295 1393 SMART PHD_3 989 1043 IPR001965 -
Csa04g02295 1393 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1134 1219 IPR016181 -
Csa04g02295 1393 CDD NAT_SF 1139 1199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02295 - - - csv:101204381 2843.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02295 Csa-Chr4:23497531 Csa07g01165 Csa-Chr7:11429549 2.91E-120 dispersed
Csa04g02295 Csa-Chr4:23497531 Csa07g01711 Csa-Chr7:17589701 3.58E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31609 PF16135 TDBD 7.30E-16 No_clan Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02295 Csa_Chr04 FPKM 6.936072 7.382864 3.801402 2.955438 5.1236 4.637374 4.853417 4.397872 4.197801 4.533164