Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02300 ATGCTTAGCTTTACACACTTCAACCATCTTCTTCTTCTTCCTCTTCCTCCAACAACTCAGTTCAAATTTCAAGCTCCTTTTCCCAAATTTCAACTCCAATCCCACTTCTCACTTCAACTATTTCCTCAACCACCATCGATTTCTCATTTTCTCGCCAATCGGCCATCTGGGTGTCGACAATTATGTTTGTATTCTTCGAATTCCCTTGGATTTTCTCCCTCTGATGAAGATTTCGATGATGAATTGGACCGATTGTTGGTGCTTTTACCTGAAGAAATGCGGCGCAGAATAAGGGAGCATGAGGAGTGTCACCAGCTTATTGAAGTGGTCTTGGATTTGGGAAGGAAACCACTGGCTCGGTTTCCTACGGGAGATTTCCTGCTCTCGGATTCTCTAGTAACTGTTGATGATCTACGCCATGCTACTTCCAAGGTTGGTGACTTTGCCATTGACAATAGAGCTGGCATTAGTAGGACATTGCATCGTATCAGTGCCATCAGAAATCGGAAGGGTGTAATTATTGGTCTAACTTGTCGTGTGGGTCGAGCTATATCAGGAAGTGCTATCTTGCTGAGGGATTTGATTCAAGATGGGGCTTCTTTGTTGCTCATTGGACCTCCAGGGGTAGGAAAAACCACAATTATCAGGGAAATAGCTAGGATACTTGCTAATGATTTCAAGAAGCGTGTAATGATTGTCGACACCTCCAATGAGATTGGTGGCGATGGTGATATACCTCATGCAGGAATTGGTAATGCTCGTCGAATGCAAGTTCCAGATTCTGATATGCAACATAAGGTTTTGATTGAAGCAGTTGAAAACCATATGCCTCAAGTAATTATTATAGATGAAATAAGCACAAAACTTGAAGCCATGGCTGCCAGCACCATAGCCCAACGTGGAATTCAGTTAGTAGCGACTGCTCATGGAGTTACAATTGAAAATCTTATCATGAATCCTTTACTGGAGATGCTTGTTGGAGGAATACAGAGTGTAACTCTTGGGGATGAGGAAGCAAGCCGGAGACGTGTTCAAAAGACTGTGCTGGAAAGAAAAGGACCTTCAACATTTGCTTGTGGGGTAGAAATCATATCAAAGACTGAGTTGAGAGTTCATCGTAGCCTTGATGCAACTGTTGACGCAGTTCTTTGTGGTCGTTATCCTAATGTTGAAGTTCGAAAGATAAATTCTACGGAAGAGAAAGAAACCATGCAAAGTGATATTTCCATATCCACTATCGCCCAGAATAAGGATGACGCTCCAGTTAGTGTATCTGATACGTATTATGAGCAAAGTGGTCAGGCGCCCAGTGAGATGTCTTTTGAGGTCCTTCCAACTGCAGGAGAATCATCTGAAGAAGATGAAGGAAAATTTCCACTTTATCTGTTTGTTTATGGGGTATTAGAAGCAAGTGTGATCCAAGGATTCAAGCAGTTAAGGATGAATGATGTGGCCATCCATTTTACTGATAATATCAGTGAAGCAGATGCGCTTTTTGCCTTGCAGCCCAAGCTTAAAAAGAATGCTGGGATTCAAGCTGCTGCAAAATCTCATGACATACCCATTTACGTGGTTAAGACTGGCTCGCTAGTGCATATCACAAGGGCCTTAAGGGCACTGATTATTGATCAGGAAGACGAGGGAGAAGATTTTGAATCATTGGGGAGGATGAGATCCTCGGAGAAGATTGATGCTTTGGAGGAAGCGAGGATGGCCATTGAGCAGATTGTTATCCCAAGAGAAGAGTCTGTTGAGCTTCTCCCTAGACCACCCCATATCCTGTCTCTTCAGATGGATCTTATTCGGAAGTATCATCTACAGTCAGAGAGAATTGGCATGGAGACAAATGTTCGTCTCCGAATCTTACCCTTGATTGCTAATAATGTGGATGAAAATGCAAAAACACAGGGAAAAGTAGATCCTACAACCGAATTCGATGACTTCATTGGTTCCAATGGTGACACTAATGGAACTCTCTATAGTGTGGACAGGTTACCCTTACTTCCTGAGTAG 2013 42.82 MLSFTHFNHLLLLPLPPTTQFKFQAPFPKFQLQSHFSLQLFPQPPSISHFLANRPSGCRQLCLYSSNSLGFSPSDEDFDDELDRLLVLLPEEMRRRIREHEECHQLIEVVLDLGRKPLARFPTGDFLLSDSLVTVDDLRHATSKVGDFAIDNRAGISRTLHRISAIRNRKGVIIGLTCRVGRAISGSAILLRDLIQDGASLLLIGPPGVGKTTIIREIARILANDFKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPDSDMQHKVLIEAVENHMPQVIIIDEISTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPLLEMLVGGIQSVTLGDEEASRRRVQKTVLERKGPSTFACGVEIISKTELRVHRSLDATVDAVLCGRYPNVEVRKINSTEEKETMQSDISISTIAQNKDDAPVSVSDTYYEQSGQAPSEMSFEVLPTAGESSEEDEGKFPLYLFVYGVLEASVIQGFKQLRMNDVAIHFTDNISEADALFALQPKLKKNAGIQAAAKSHDIPIYVVKTGSLVHITRALRALIIDQEDEGEDFESLGRMRSSEKIDALEEARMAIEQIVIPREESVELLPRPPHILSLQMDLIRKYHLQSERIGMETNVRLRILPLIANNVDENAKTQGKVDPTTEFDDFIGSNGDTNGTLYSVDRLPLLPE* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23536282 23546013 - CsaV3_4G033260.1 Csa04g02300 527910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02300 670 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 205 224 - -
Csa04g02300 670 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 568 586 - -
Csa04g02300 670 Pfam Sporulation stage III, protein AA 190 327 IPR045735 -
Csa04g02300 670 Gene3D - 182 347 IPR027417 -
Csa04g02300 670 CDD R3H_AAA 564 623 IPR034081 -
Csa04g02300 670 SMART AAA_5 197 328 IPR003593 -
Csa04g02300 670 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 35 627 - -
Csa04g02300 670 PANTHER KINASE-RELATED 35 627 - -
Csa04g02300 670 CDD AAA 180 285 - -
Csa04g02300 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 342 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02300 - - - csv:101204864 1256.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01688 Csa-Chr2:16104708 Csa04g02300 Csa-Chr4:23536282 2.53E-148 dispersed
Csa02g01689 Csa-Chr2:16108129 Csa04g02300 Csa-Chr4:23536282 6.23E-11 dispersed
Csa04g02300 Csa-Chr4:23536282 Csa02g01675 Csa-Chr2:15984733 1.32E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g138 . . . . . . . . . . . Cma09g00828 . Car09g00743 Sed05g2531 Cpe06g00659 . Bhi09g03493 Tan01g4341 Cmetu07g2289 . Hepe01g1428 Mch11g1024 . Cla11g01721 Cam11g1790 Cec11g1811 Cco11g1817 Clacu11g1949 Cmu11g1759 Cre11g2168 Cone6ag0183 Cone9ag0208 . . Lsi04g02028 Csa04g02300 Chy07g00035 Cme07g00546 . . . . . . . . . . Cmo09g00821 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008962 2 1 1 2 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02300 Csa_Chr04 FPKM 23.24021 21.836266 23.948292 24.914684 10.824722 10.604712 10.337879 21.499645 20.888699 23.23259