Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02302 ATGATAGGAATGGCAGAAGAGGAGCAAAAACAGAGGTGTTATAATAATAGATTTGGGAGTTTTGGGACAATTGGTGGTATTAGTGGTAGATCTTCTTCTAAGAAACTTAAACCAAAGCCTAAGAAAGTTCCACAAAGAGGACTTGGCGTTGCACAGCTTGAGAAGATTAGATTAGAGGAACAACAGAAGAATGATGCAGCTGCTGCAATTTTCTCATCTTCTTCTCCATTGTCACCAACCAAATCCTCCTCTTATTTGTCTTTACCGATTCCTAGTTTTCTCCAATCAAACCGATCATCATCTTCGTCGTCTTTCCCTTCGTCACCTCCGGTGAATCTCTCCTCGTCCGCCTCAATGTTTGGGCCACCTCTGCCTGTTTTAAACATGCATGTTAAAGATTCTTTCACTGTTCCATTGATGGATCAAGCAAATAGTGGTGGATCTGAAACTGGGTTGTCTGCAGTTACAATTTTGGAGCAAGGAAATGCTCTCAAATGGCAAAATTCTTGTGATTACTATCTTGAGAAGGAAAATTATGGGGTTGATCCTGGGTTGGCACTTCGTTCAGATTTTGATTTCCCTTATGGAGTTAACCCTGGCTTGCCTTCTACAAAACTCCTGCAAAGATCACAGGAAAATCAAGCACCTTCTCCCATGGTGAATCTGTCATCAACAACTTCAATGTCTTCTGGTCTTAATGTCCAGATAGAGCCCCCTTCAAACCAAAGCTATTGTTATGGCAACTACTCAACCATCTGGCCAGACAAGGAAGAGAAGATGTTCGGCACGAAGAGATTGCCTCGCTTTTCTCCAAACAATCCAACTGAACCGGTGTTTGATCACAACTCTTCCTTCACTGTTCCAAATAGATCCGATGATTCAACATCACATGGCAATGGAAGCGCACTGAGTTTTCGAGAGGATCGTGCTCGGAGCTTAACATGCGTATCTGCACCGAGTTCCTTGGAACACATCAAAGACGATGACTTTAATGGAAACTTCCTTACCCTTGCTTCTCTTGCTACTTGTTGGACATCATGTTCAAGCTCTAAGATTGCTAAGTGTCCTCCAACCTATCCTCTTCTTCAGAATCTTAGGAATTCCAATTCGGAACCACATTCTTCTCAGGGAGGATTAAAACCTGTCAGATTGGCCGAAAAGCAGCCTTTCTATAGCTTCCTCCCACCTGCAGAGACAAAAACTGGGAAAGAAACTGCCATTTCTAAAACCAAGTGCAATGGGGAAGTAGGAGAAATACTTGATCTAGATTTGAAGTTGTAG 1281 42.54 MIGMAEEEQKQRCYNNRFGSFGTIGGISGRSSSKKLKPKPKKVPQRGLGVAQLEKIRLEEQQKNDAAAAIFSSSSPLSPTKSSSYLSLPIPSFLQSNRSSSSSSFPSSPPVNLSSSASMFGPPLPVLNMHVKDSFTVPLMDQANSGGSETGLSAVTILEQGNALKWQNSCDYYLEKENYGVDPGLALRSDFDFPYGVNPGLPSTKLLQRSQENQAPSPMVNLSSTTSMSSGLNVQIEPPSNQSYCYGNYSTIWPDKEEKMFGTKRLPRFSPNNPTEPVFDHNSSFTVPNRSDDSTSHGNGSALSFREDRARSLTCVSAPSSLEHIKDDDFNGNFLTLASLATCWTSCSSSKIAKCPPTYPLLQNLRNSNSEPHSSQGGLKPVRLAEKQPFYSFLPPAETKTGKETAISKTKCNGEVGEILDLDLKL* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23565050 23568426 + CsaV3_4G033280.1 Csa04g02302 527912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02302 426 MobiDBLite consensus disorder prediction 275 302 - -
Csa04g02302 426 MobiDBLite consensus disorder prediction 17 48 - -
Csa04g02302 426 PANTHER OS01G0212500 PROTEIN 4 426 - -
Csa04g02302 426 MobiDBLite consensus disorder prediction 267 303 - -
Csa04g02302 426 PANTHER OS01G0212500 PROTEIN 4 426 IPR040356 GO:0003700
Csa04g02302 426 MobiDBLite consensus disorder prediction 211 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02302 - - - csv:101205113 779.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00842 Csa-Chr4:5894201 Csa04g02302 Csa-Chr4:23565050 1.14E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g141 . . . . . . Bma10g00485 . . Cmo04g00601 Cma01g01236 . Car01g01057 . . . Cpe02g00680 Bhi09g03491 . . . . . . Cla11g01723 Cam11g1792 Cec11g1813 Cco11g1819 Clacu11g1951 Cmu11g1761 Cre11g2170 . . Cone14ag1039 Cone15ag1025 Lsi04g02030 Csa04g02302 Chy07g00037 Cme07g00548 . . . Bda12g00824 . Bpe03g00848 . . . Cmo01g01289 . Cma04g00563 . Car04g00534 . . Cpe01g00508 . . . . . . . Cla07g00943 Cam07g1019 Cec07g1089 Cco07g1067 Clacu07g0988 Cmu07g0984 Cre07g1358 . . Chy07g00957 Cme07g01327
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009454 2 4 1 0 0 0 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02302 Csa_Chr04 FPKM 10.940075 9.627009 3.127848 2.676629 0.179803 0.369503 0.326808 0.183481 0.336027 0.406789