Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02305 ATGGGAAATCTTCTCTTTTTGTTTTCTTTCTTGTTGTTTGCTCTGATGGTTTCTGGAAACCATGAAACTGGAAGAAATGCGAGTGCAACAATGATTGTTGGTGAAAAGGGTAGAATAGGGGCCATTGTAGATGTGAGTTCCAGGATTGGCAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAGCAATCAAAATTTCAGTCTTGTCATTAGAGACTCCAGAAATGACCCCAATCTTGCAGCTCTTGCAGCTAAAGATCTCATAACTGTACAACAAGTTCAGGCTCTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGTTGGAAATGAGAATCAGATTCCGGTACTAGCATTAGCTAATGAAATACCAAAATGGGCAACCGAGAGGTCCAAATTTTTGGTCCAGGCTTCTCCTTCTCAGTTAAATCAAATGAGGGCTATAGCTGGTATTGTCAGTTCAGGGGACTGGCATCTAGTCAATGTTATATATGAAGATAGTGATCTCTCAACCAATGGAGTATTTCTTTATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAGTAGGTCAATTTGTCGGTCTCTCACAGTTTGATTCTGACTTATTTTCAGAACTGGAAAAGCTAAGAAGAGGGTCAAGCAGAATTTTTGTAGTTCATATGTCTTTCAAGTTGGCACTGCGTCTATTTGAGATAGCAAACGAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACTGATTCTTTCACAAGCCTTGTACATTCTTTCAATGTTTCTATCAACTCTATACTACAAGGAGTTGTTGGAGTCAAGAGCTACATCTCAGAAAGAAATCCTCCATATCATGAATTTTATCTTCGATTTTGTCAAAGGTTTAGATTAGAGCATTTTGATGAGCACAACAACGAGCCCGGTGTTTTTGCAGTGCAGGCATATGATGCTGCAAAGACAGCAGCTTTGGCAATGAGTGAAATCCAAGATAAGGGTAATGACTTGTTAGATAAAATAAAGCTCACAGACTTTCAAGGACTTGGTGGAAAGATTCAGTTTAAGGATAGAAAATTAGCCCCAGCCGATACTTTTCAGATCATCAATGTGATTGGTAGAAGTTATAGGGACCTAGGCTTCTGGTCTGATAAATTAGGCTTCTCGCAAGATTTGCAGGAAAATTCATCTTCTAGCTTGTTGATGAAGGAACTTGATAACGTGTTTTGGCCAGGTGGATCTTTGAAAACTCCAAGGGGATGGGTTGTACCAACAGATTCCGCCCCTTTGAGAATTGGGGTGCCAACTAATTCCATGTTCAAACAGTATGTACGTGTGGAAGAAGATCCTACGGGAAACAATTTAACCTTCAATGGACTTGCAATTGATCTGTTTAAAGCAATGCTAGACTACCTTCCGTTTGCTCCACATGTCTTCTGCCCTTTCAACGGAACTTATAATGATTTAGTGAAAGAAATCTACTTGAAGAATTTTGATGCAGCTATAGGTGACATAGCAATAACCACAAAACGCATAGGACACGCAGAATTTACACATCCCTACTCTGAAGTAGGACTGGTGATGATAGTTCCTACCAGAAAAGACACAAGCAACAAAGCATTGTTGTTCACAAAGCCCTTTACAGTGACCATGTGGATTCTAATTGCTGTGGTAACTGCCTACAATGGCTTTGTCGTGTGGTTCATAGAACGAAATCACTGTCCTGAACACCAAGGTTCAATGTTTGATCAAGCTGGAGCCATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTGCATGGCAATAGGCTGCATAGTAACTTATCACGAATGGCTATGGTGGCCTGGCTATTTACGGCACTTGTGATAACTCAGACATACACTGCCAATCTTGCTAGCATGCTCACTGTTCAAAAGTTGGAAGCGTCGATATCAAATATCGAGACTCTCCAGAAAATAAATGCATCTGTAGGAAACGGCAAAGGAACCTTTGTCAAGACATATCTGGAAGAAGTTTTAGACTTTCCTGCCGAAAGTATAAAAAGCTACACTACCCCTAACGACCTAGTTGACGCTCTCAGAAACAAGGAAATAGCAGCAGCATTTCTTGAAGTCCCTTTTGCAAAGTTATTCCTTGCAAGGTTTTGCAAGGAATTCATGATTGCTGGACCAACCTACCTTATCGGAGGATTTGGATTCGCATTTCCAAGAGGCTATCCGCTGTTACGAGATGTTGACAAAGCACTGCTTAAGGTATCTGAAAGTGGGAAGTATAGAAAGTTGGAGGAAAGCATGATTGGTAGTGAGAAATGTGAGGATACGGATGTAAAAGATGAAAGTTCAAGCCTTAGCCCCAACAGCTTCTTTATACTATTTGTATTGAGTGGAGGAGTATCAACCATAGCATTAACATTGTACACTATCAGTGCTCATAAATCTTGTGTTCAACAGAACGCTATTTGGAGACTAATGTTGGCTGTAATTAAGCGCTGGAGAAATCACAACAGAGGATTTTCTCGCCGAGTAAGCGACCTTCCACAAACCGAACTGAAGAACTGCCCAAAGGCTACAAACTTGCAAATTCAGGTCTAG 2610 41.0 MGNLLFLFSFLLFALMVSGNHETGRNASATMIVGEKGRIGAIVDVSSRIGKEEILAMHMAIEDFNSLSNQNFSLVIRDSRNDPNLAALAAKDLITVQQVQALIGPQTWEMASVVAEVGNENQIPVLALANEIPKWATERSKFLVQASPSQLNQMRAIAGIVSSGDWHLVNVIYEDSDLSTNGVFLYLVHALKDVGAEVGQFVGLSQFDSDLFSELEKLRRGSSRIFVVHMSFKLALRLFEIANEMGMMGKDYVWITTDSFTSLVHSFNVSINSILQGVVGVKSYISERNPPYHEFYLRFCQRFRLEHFDEHNNEPGVFAVQAYDAAKTAALAMSEIQDKGNDLLDKIKLTDFQGLGGKIQFKDRKLAPADTFQIINVIGRSYRDLGFWSDKLGFSQDLQENSSSSLLMKELDNVFWPGGSLKTPRGWVVPTDSAPLRIGVPTNSMFKQYVRVEEDPTGNNLTFNGLAIDLFKAMLDYLPFAPHVFCPFNGTYNDLVKEIYLKNFDAAIGDIAITTKRIGHAEFTHPYSEVGLVMIVPTRKDTSNKALLFTKPFTVTMWILIAVVTAYNGFVVWFIERNHCPEHQGSMFDQAGAMLCSSFTTLFSLHGNRLHSNLSRMAMVAWLFTALVITQTYTANLASMLTVQKLEASISNIETLQKINASVGNGKGTFVKTYLEEVLDFPAESIKSYTTPNDLVDALRNKEIAAAFLEVPFAKLFLARFCKEFMIAGPTYLIGGFGFAFPRGYPLLRDVDKALLKVSESGKYRKLEESMIGSEKCEDTDVKDESSSLSPNSFFILFVLSGGVSTIALTLYTISAHKSCVQQNAIWRLMLAVIKRWRNHNRGFSRRVSDLPQTELKNCPKATNLQIQV* 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23594567 23598381 + CsaV3_4G033310.1 Csa04g02305 527915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02305 869 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 862 - -
Csa04g02305 869 SUPERFAMILY Periplasmic binding protein-like II 414 769 - -
Csa04g02305 869 Pfam Bacterial extracellular solute-binding proteins, family 3 460 770 IPR001638 -
Csa04g02305 869 CDD PBP1_GABAb_receptor_plant 38 398 IPR044440 -
Csa04g02305 869 Pfam Receptor family ligand binding region 55 378 IPR001828 -
Csa04g02305 869 PANTHER GLUTAMATE RECEPTOR 28 862 - -
Csa04g02305 869 CDD GluR_Plant 435 772 - -
Csa04g02305 869 SUPERFAMILY Periplasmic binding protein-like I 38 428 IPR028082 -
Csa04g02305 869 Gene3D - 156 307 - -
Csa04g02305 869 Gene3D - 636 735 - -
Csa04g02305 869 PIRSF IGluLR_plant 332 862 IPR017103 -
Csa04g02305 869 PIRSF IGluLR_plant 1 342 IPR017103 -
Csa04g02305 869 Pfam Ligand-gated ion channel 771 802 IPR001320 GO:0015276|GO:0016020
Csa04g02305 869 Gene3D - 435 556 - -
Csa04g02305 869 Gene3D - 632 768 - -
Csa04g02305 869 Gene3D - 343 434 - -
Csa04g02305 869 SMART GluR_14 437 774 IPR001320 GO:0015276|GO:0016020
Csa04g02305 869 Gene3D - 35 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02305 - - - csv:101209950 1716.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02305 Csa-Chr4:23594567 Csa06g01991 Csa-Chr6:17912287 1.38E-136 dispersed
Csa04g02304 Csa-Chr4:23589185 Csa04g02305 Csa-Chr4:23594567 0 tandem
Csa04g02305 Csa-Chr4:23594567 Csa04g02306 Csa-Chr4:23605583 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02305 Csa_Chr04 FPKM 0.320686 0.698353 0.0 0.323303 1.721381 1.311957 2.337555 0.24162 0.118866 0.083898