Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02306 ATGTTGTTTGCTCTAGTTGTTTATGGAGTGTATGAAACTGAAGGAAACACGAAGTCGACGATGGACGATAGCAGAAATGGCAAAATAGGTGTCATTGTAGACAAGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTGTTGAGGATTTTAACTCCTTTCGCAATCAAAGGGTCAGTCTTGTCATCAGAGACTACAAAAGTGATCCAAATCTTGCAGCTCTTGCAGCTAATGATCTCCTCAATATGCAACGAGTCCAGGTTCTAATAGGACCACAAACTTGGGAAGCGACGTCTATAGTTGCTGAGGTTGGAAATGAGAAACAGATTCCGGTTCTAGCGTTAGCTAATGATATACCAAAGTGGGCAAACAAGAGGTTCAAATTTTTGGTCGAAGCTTCTCCCTCTCAGTTAAATCAAATGAGAGCTATAGCCGGTATTGTCAGTTCGTGGGATTGGCACCTCGTCAATGTTATATATGAAGATAAAGATTTCTCAACCACTGGAATATTTCCTCATCTTGTTCATGCCCTCAGAGACGTAGGAGCTGAAGTAAATGAATTTGTTGGTCTCTCTCAATTTGATTCTGATTTATTTTGCAGAGAATTGGAAAGGTTAAGAAGAGGATCAAGCAGAATTTTTGTGGTTCATATGTCTTTTAAGTTGGCATTGCGTCTATTTGAGATAGCAAATGAGATGGGAATGATGGGAAAGGATTATGTTTGGATCGCTACTGATTCTTTCACAAACCTTGCATATTCTTTCAATGCTTCTAGTAACTCTCTACTACAAGGAGTTGTTGGAGTCAAGAGCTTCTTCCCTGAAAACAATCCTCAATTTCACGAATTTTATCATCGATTTTCTCGAAGGTTTAGATTAGAGCATTCTGACGAGGACAATCATGAGCCTGGTATTTTCGCTATTCAGGCTTATGATGCTGCAAGGACAGCAGCTATGGCAATGAGTAAACTCCAAGAAAAGGGTAATCACTTGATGGAGAAAATAGAGCTCACTGATTTTCAAGGACTCGGTGGAAAGATTCAGTTTAGGGACAGACAATTAGCGTCATCTGATACTTTTCAAATCATCAATGTGATGGGGAGGAGTTATAGAGAACTAGGCTTCTGGTCTGATAAATTAGGCTTCTCACGAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCTATGAAGGATCTCGTCGAAGTGCTTTGGCCTGGTGGATCGTCTGTAACTCCAAGGGGTTGGGTTGTACCGACAGATGCCACTCCATTGAGAATTGGGGTGCCAACTAGTTCCATGTTCAAACAGTATGTACATGTGGAAGGAGATCCTACGGGAAACAATTTATCCTTCAATGGACTTGCAATTGATCTGTTTAAAGCAACCTTAGACAACCTTAACTTCCCTCTACCATACCAGTTTTTTCGTTTCGATGGACCATATGATGATTTGGTAGAGCAAATCTACCTGAAGAACTTCGATGCAGCCGTAGGTGATATAGCGATATTATCACGACGCTATAAGCATGCAGAGTTTACACATCCTTACTCAGAAGCAGGACTTGTGATGGTAGTTCCTACCACAAAAGATACAAGTAATAGAGCATTGATGTTCACAAAGCCTTTTACAGCGACCATGTGGTTTGCAATTGCCGTGATAAATGTCTACAATGGCTTTGTAGTCTGGTTTATAGAACGAAATCGCTATCCTGGTCATGAAGGTTCGATGTTTAATCAAGCCGGAACCATGCTTTGCTCATCCTTCACCACACTCTTCTCCTTACATGGTAATATGCTGCATAGTAACTTTTCCAGAATGACCATGGTGGTTTGGCTATTTATGGCACTTGTGATAACTCAAATATATACTGCTAATCTTACAAGCATGCTCACTATTCAAAAGCTTGAACCGACTGTAACGGATATCGAGACTCTTCAAAGGGCAAATGCGTTGGTTGGATTTGGCAGAGGATCCTTTGTCAAAAGATATTTGGAGGAAGTCTTACACTTTCGTTCCGAAAACATAAGAAACTACTCTTCACCTAATGATTATGCTGAAGCTCTCAGAAACAAGGAGATAGCAGCTGCTTTTCTTGAAGTCCCGTTTGTAAAAATATTCCTTGCAGAATTTTGTAGGGAATTCATGGTTTCTGGGCCAACCTATAAAGTTGGAGGATTTGGATTTGCATTCCCGAGAGGCTCGCCGATGTTAACGGATATTAACGAAGCATTGCTTAAGGTATCTGAAACTGGGAAGTTCAGAGATTTGGAAGATAGCATGATTGCTAATGAGAAATGTGAGGATGAGGATCCAAAGGGTGAAAAGTCAAGCCTCAGCCCCAGCAGCTTCTTTATATTGTTTGTATTGAGTGGAGGAGTATCAACAATAGCTCTCACGTTATACATCTTTAATGCTCATGACTTCAATTTTCAACAGAATACCATTTGGAGATTAATGATAGCTATAATGAGACAGTGGGGAAACCAGAGGAGGCGATTTTCTCGACGAGTAAGCGATGAATCGCAAATGCCTGTCTCGAATGACACCAACTTGCAAATTCAAGTCCAGTAA 2580 40.78 MLFALVVYGVYETEGNTKSTMDDSRNGKIGVIVDKSSRIGKEEILAMQMAVEDFNSFRNQRVSLVIRDYKSDPNLAALAANDLLNMQRVQVLIGPQTWEATSIVAEVGNEKQIPVLALANDIPKWANKRFKFLVEASPSQLNQMRAIAGIVSSWDWHLVNVIYEDKDFSTTGIFPHLVHALRDVGAEVNEFVGLSQFDSDLFCRELERLRRGSSRIFVVHMSFKLALRLFEIANEMGMMGKDYVWIATDSFTNLAYSFNASSNSLLQGVVGVKSFFPENNPQFHEFYHRFSRRFRLEHSDEDNHEPGIFAIQAYDAARTAAMAMSKLQEKGNHLMEKIELTDFQGLGGKIQFRDRQLASSDTFQIINVMGRSYRELGFWSDKLGFSRELRENSSSSSSMKDLVEVLWPGGSSVTPRGWVVPTDATPLRIGVPTSSMFKQYVHVEGDPTGNNLSFNGLAIDLFKATLDNLNFPLPYQFFRFDGPYDDLVEQIYLKNFDAAVGDIAILSRRYKHAEFTHPYSEAGLVMVVPTTKDTSNRALMFTKPFTATMWFAIAVINVYNGFVVWFIERNRYPGHEGSMFNQAGTMLCSSFTTLFSLHGNMLHSNFSRMTMVVWLFMALVITQIYTANLTSMLTIQKLEPTVTDIETLQRANALVGFGRGSFVKRYLEEVLHFRSENIRNYSSPNDYAEALRNKEIAAAFLEVPFVKIFLAEFCREFMVSGPTYKVGGFGFAFPRGSPMLTDINEALLKVSETGKFRDLEDSMIANEKCEDEDPKGEKSSLSPSSFFILFVLSGGVSTIALTLYIFNAHDFNFQQNTIWRLMIAIMRQWGNQRRRFSRRVSDESQMPVSNDTNLQIQVQ* 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23605583 23608754 + CsaV3_4G033320.1 Csa04g02306 527916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02306 859 Gene3D - 682 771 - -
Csa04g02306 859 SMART GluR_14 428 766 IPR001320 GO:0015276|GO:0016020
Csa04g02306 859 MobiDBLite consensus disorder prediction 842 859 - -
Csa04g02306 859 Gene3D - 322 425 - -
Csa04g02306 859 Pfam Receptor family ligand binding region 45 368 IPR001828 -
Csa04g02306 859 MobiDBLite consensus disorder prediction 840 859 - -
Csa04g02306 859 SUPERFAMILY Periplasmic binding protein-like I 28 419 IPR028082 -
Csa04g02306 859 Gene3D - 426 538 - -
Csa04g02306 859 CDD PBP1_GABAb_receptor_plant 28 389 IPR044440 -
Csa04g02306 859 PANTHER GLUTAMATE RECEPTOR 20 854 - -
Csa04g02306 859 Pfam Bacterial extracellular solute-binding proteins, family 3 451 760 IPR001638 -
Csa04g02306 859 Gene3D - 24 144 - -
Csa04g02306 859 SUPERFAMILY Periplasmic binding protein-like II 403 761 - -
Csa04g02306 859 CDD GluR_Plant 426 764 - -
Csa04g02306 859 Pfam Ligand-gated ion channel 761 794 IPR001320 GO:0015276|GO:0016020
Csa04g02306 859 Gene3D - 145 304 - -
Csa04g02306 859 Gene3D - 539 681 - -
Csa04g02306 859 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 20 854 - -
Csa04g02306 859 PIRSF IGluLR_plant 1 858 IPR017103 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02306 - - - csv:101210201 1659.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02304 Csa-Chr4:23589185 Csa04g02306 Csa-Chr4:23605583 0 dispersed
Csa04g02306 Csa-Chr4:23605583 Csa02g02451 Csa-Chr2:21607636 8.64E-143 dispersed
Csa04g02305 Csa-Chr4:23594567 Csa04g02306 Csa-Chr4:23605583 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02306 Csa_Chr04 FPKM 0.458101 0.279463 1.804735 2.310311 5.745129 3.598444 6.306928 0.664881 0.712852 1.202504