Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02307 ATGGCTCAATTGCCCCCCAAAATACCTTCTTTCCCTCAAAATTGGCCTCCTTTTCCTCCTCCTCCTACTTCAATGCCCAATAGTTTATCATCTCCTCCCCCCCCGCCGCCTTCCTCCACCTCCTCCTCAGCTGCTTCCTGGCTCGATGATTTCCTCGACTTCTCCACCGCCCGCCGCGGCCTTCACCGGAGATCCATTAGCGACTCCATTGCTTTCCTTGAAACCACCACCACCACCACCACCAATAACAACATCAACAACCCTTTTTCCGATCAATGTCGTAACTCCTCCTCTGCTGCTCTTCTTCATCCTCCTCCTCCCTTTGACCGCCTAGACGATGACCAACTTATGTCCATGTTTTCCGATGACATTTCCATTCCTCAGCTCCCTCCTAACTCCCCTTCCAATCCTTCCACTCCTTCCGACCAGAATAGTAATAATGATGATAAAAACACCCCTACCGATGAGGTTATGTTTTCCTCACCCCTGCCCCCGCCCATGAAGAATGAACCTGCTGACGGTGAAATTAGCTCCTCTTCTCAAGTTCTGCAGCAATCTCAACCTCCTCCCCCGCCTTCCTCTGCCGTTGATAACTCCATTGATCCTAAACGAGTTAAAAGAATACTGGCAAATCGACAATCAGCACAAAGATCGAGAGTGAGAAAATTGCAATACATTTCTGAGCTGGAAAGAAATGTAACTACATTACAGACTGAAGTATCAGCATTGTCCCCAAGAGTTGCATTTTTAGACCACCAAAGATTGATTCTAAATGTTGATAACAGTGCCCTCAAGCAAAGAATTGCAGCTTTGGCTCAAGATAAGATTTTCAAAGATGCTCATCAAGAGGCATTAAAGAAGGAAATAGAGAGATTGAGGCAAGTTTACCACCAACAAAGTATGAAGAAAATGAGCAACAATCAAAATGGGGCGGCGCAACCGCAAGCAGCGTTGTCCGGTGAAGGTACGCCGCCGTCGAAAGCGGGTGAGACGGAGAAAGAGAAGGCTCTAAGTTGA 1017 47.49 MAQLPPKIPSFPQNWPPFPPPPTSMPNSLSSPPPPPPSSTSSSAASWLDDFLDFSTARRGLHRRSISDSIAFLETTTTTTTNNNINNPFSDQCRNSSSAALLHPPPPFDRLDDDQLMSMFSDDISIPQLPPNSPSNPSTPSDQNSNNDDKNTPTDEVMFSSPLPPPMKNEPADGEISSSSQVLQQSQPPPPPSSAVDNSIDPKRVKRILANRQSAQRSRVRKLQYISELERNVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQSMKKMSNNQNGAAQPQAALSGEGTPPSKAGETEKEKALS* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23609265 23612205 - CsaV3_4G033330.1 Csa04g02307 527917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02307 338 MobiDBLite consensus disorder prediction 1 40 - -
Csa04g02307 338 PANTHER BASIC LEUCINE ZIPPER 2 1 316 - -
Csa04g02307 338 SUPERFAMILY Leucine zipper domain 203 257 IPR046347 GO:0003700|GO:0006355
Csa04g02307 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 201 253 IPR004827 GO:0003700|GO:0006355
Csa04g02307 338 PANTHER BASIC LEUCINE ZIPPER 34 1 316 - -
Csa04g02307 338 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 206 221 IPR004827 GO:0003700|GO:0006355
Csa04g02307 338 SMART brlzneu 199 263 IPR004827 GO:0003700|GO:0006355
Csa04g02307 338 MobiDBLite consensus disorder prediction 138 158 - -
Csa04g02307 338 MobiDBLite consensus disorder prediction 296 338 - -
Csa04g02307 338 Gene3D - 202 301 - -
Csa04g02307 338 Coils Coil 282 302 - -
Csa04g02307 338 MobiDBLite consensus disorder prediction 69 99 - -
Csa04g02307 338 MobiDBLite consensus disorder prediction 298 320 - -
Csa04g02307 338 Pfam bZIP transcription factor 203 248 IPR004827 GO:0003700|GO:0006355
Csa04g02307 338 MobiDBLite consensus disorder prediction 59 202 - -
Csa04g02307 338 MobiDBLite consensus disorder prediction 1 44 - -
Csa04g02307 338 CDD bZIP_plant_RF2 204 254 IPR044759 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02307 - - - csv:101210452 527.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02641 Csa-Chr2:22991331 Csa04g02307 Csa-Chr4:23609265 1.73E-68 dispersed
Csa03g04347 Csa-Chr3:37990588 Csa04g02307 Csa-Chr4:23609265 1.62E-06 dispersed
Csa04g02307 Csa-Chr4:23609265 Csa05g02176 Csa-Chr5:24730809 3.93E-28 dispersed
Csa05g02700 Csa-Chr5:27823435 Csa04g02307 Csa-Chr4:23609265 1.92E-19 dispersed
Csa04g02307 Csa-Chr4:23609265 Csa07g00329 Csa-Chr7:2441338 7.60E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g147 . . . . . . . . . . Cma01g01233 Cma09g00832 Car01g01054 Car09g00746 Sed05g2538 Cpe06g00663 Cpe02g00683 Bhi09g03480 Tan01g4352 Cmetu04g0980 . Hepe01g1419 Mch11g1032 . Cla11g01727 Cam11g1797 Cec11g1818 Cco11g1824 Clacu11g1956 Cmu11g1766 Cre11g2174 Cone6ag0180 Cone9ag0205 Cone14ag1040 Cone15ag1029 Lsi04g02035 Csa04g02307 Chy07g00043 Cme07g00555 . . . . . . . . . Cmo01g01286 Cmo09g00825 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000658 3 3 2 3 3 1 5 3 2 3 2 2 4 3 3 5 2 5 5 3 3 3 3 3 3 3 3 9 3 3 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31611 PF00170 bZIP_1 9.50E-10 CL0018 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02307 Csa_Chr04 FPKM 0.0 0.351708 0.238236 0.0 0.0 0.571039 0.36967 0.075094 0.0 0.157089