Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02309 ATGAAATCTCAGCTCAAGAAGAACCCTAAACCCAAATTACTCAACCCCAATTGGGCACTACTCCAACAAAAGCTGAACCCCCATGGTTCAAATCATTCGAATACTGTCCTGAAATCCGAAGCTTCATCGAAGACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATCATTCCCAAAAGAATATTCTCATTCCGGTGAATGATGACTTTAGTCTTACAGATGAAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGCCCGATAGAGCGCGTGGTTGACTTTCGGACCCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTTGCAGAGTTGATTAAAGGAAAGCTTCTTGTTGGCCATGCCTTGCGTAATGATCTCAAGGCATTACTCTTGAGTCATCCCAAGAATGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGGAAGGATGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTAGTGTTGAGATCCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTTAAAGCTGAACAAAAGCTTAAATTGAAGCAGAAAAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGAGAAAAACAGTTGGCTGAGTCCAATCAGAAATCTAATTCTGGAAGAGAAAATGGGAAATGGAGAGGGACGTATAACTGCACTTTCATGGACATAAGGGAAAGCACTCGTGTCCCTTGTCATACACCTCCAGCAATGGATATGGAATTAGATCAACCAAGTCTTCTTCCAGAGCTTTCTTTTTCTAGCCAGGGAGCCTTCTCACGGTGGAGTAGCCATTCGATGGTAACAGCTTCCAGAAACTCAATGAATCCTGATGTTCAACATCTACCTGAGCATGCTAATGGCGCCATACTCTATGGAGTGAGCCAACACAATGGTTCTAGGGTTCAGTGTGCTCAAGATTTACAGGTCACAACTGCTGCCAATCCCTGTTCTTATCTGACCTCACCATATGGTAATTACAATCAGCATTTCCCATCTCCTAGAAATGGATTGATTGGAAATCCTGCAGATACATATGCCAGGAATAGTCATTTTATTGAAGGTGGATTTCCGTACAAGAGAAGATTTTCTGAAGGGTTCCCTGTGAGTTTCCAGGGTCCCAATAGTTCTGCAAGCTTCGAGTCTTTAAATGCACCTTTTAATTCAATACATGGACATGCTCGTAGCCATTTCATTAGAGGAGACGTAATGGTTCAGCACCAACAGCCAGCTAACAATGCTCTTTGGTTAGACCACCCTGTAAATTTGAACTTTGAAGATCGAAACACTTGGTCCTGGAACCTAGCTCCTGGTGGTTTCCCTATTCATGGGGACAGTGGGATTAGAGGCTTTTCAGAAAGTTTTAATTCAGGAATTCATAGTTTTAGTGAAATGTCTGGGATGAGTTCTCCAAATTTTCAGCATCCTCCTTCCACAATAATCCAGCATTCGAGTCATCGAGTTCCACTACCACAGGCACACTTGCAAGGACAAAGAGGCCAAAATATTAGTTTACATCCCCAAGCAGCAGCTACTACACCAAGGGTTCCTTTGAGTTCTGCTTATGGGATCATGCACCAGTATTCAGAGCTAGAGCCTAGGCATACAAGAGATCTTGCATTTAGTGACCACATAACATATAATCTTCATCAAAGCAGTGTTGATCCAGAGACAATGTTTCGACGCCGTTCAACATATCAACTGAGAGTTCCAGAGGAGGATGAATTCTCTGTACGTGGGGCTCGGGTGTCAGCTTCAGCTTCAGACTCTAATGATATAGGAGGTTTTGCTGACACATACGGAGATATGCGCCTGGATATTGAAAACATGTCATATGAGGAGCTTCTTGAATTAGAGGAACGGATTGGCTATGTCGGAACTGGGTTGTCTGAGAAAATAATTACGAGTCTACTGAAGACAAGGATTTCTGTACCATCTGCAAGGGATGTAAATTTAGAAGTCGGCGCAACCTCTATGAATGAGGAAACAAATTCATGCACCATATGCCTGGATGTCATCGACGACGGGACAAAGATTGGAATCCTTGATTGCAAACATTATTATCATGCAGATTGCTTAAAACAATGGCTGCTCATAAAAAACGTTTGCCCAGTCTGCAAATCGGAGGCATTGAAAAGATGA 2343 43.06 MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGEKQLAESNQKSNSGRENGKWRGTYNCTFMDIRESTRVPCHTPPAMDMELDQPSLLPELSFSSQGAFSRWSSHSMVTASRNSMNPDVQHLPEHANGAILYGVSQHNGSRVQCAQDLQVTTAANPCSYLTSPYGNYNQHFPSPRNGLIGNPADTYARNSHFIEGGFPYKRRFSEGFPVSFQGPNSSASFESLNAPFNSIHGHARSHFIRGDVMVQHQQPANNALWLDHPVNLNFEDRNTWSWNLAPGGFPIHGDSGIRGFSESFNSGIHSFSEMSGMSSPNFQHPPSTIIQHSSHRVPLPQAHLQGQRGQNISLHPQAAATTPRVPLSSAYGIMHQYSELEPRHTRDLAFSDHITYNLHQSSVDPETMFRRRSTYQLRVPEEDEFSVRGARVSASASDSNDIGGFADTYGDMRLDIENMSYEELLELEERIGYVGTGLSEKIITSLLKTRISVPSARDVNLEVGATSMNEETNSCTICLDVIDDGTKIGILDCKHYYHADCLKQWLLIKNVCPVCKSEALKR* 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23623371 23630899 - CsaV3_4G033350.1 Csa04g02309 527919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02309 780 Pfam Exonuclease 79 226 IPR013520 -
Csa04g02309 780 SUPERFAMILY RING/U-box 732 777 - -
Csa04g02309 780 SMART ring_2 733 773 IPR001841 -
Csa04g02309 780 SMART exoiiiendus 77 235 IPR013520 -
Csa04g02309 780 ProSiteProfiles Zinc finger RING-type profile. 733 774 IPR001841 -
Csa04g02309 780 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 35 255 - -
Csa04g02309 780 MobiDBLite consensus disorder prediction 243 279 - -
Csa04g02309 780 MobiDBLite consensus disorder prediction 24 60 - -
Csa04g02309 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 714 778 IPR013083 -
Csa04g02309 780 MobiDBLite consensus disorder prediction 44 59 - -
Csa04g02309 780 PANTHER RNA EXONUCLEASE 4 35 255 - -
Csa04g02309 780 CDD REX4_like 79 227 IPR037431 GO:0006364|GO:0008408
Csa04g02309 780 Pfam Ring finger domain 731 774 IPR001841 -
Csa04g02309 780 MobiDBLite consensus disorder prediction 24 42 - -
Csa04g02309 780 Gene3D - 76 253 IPR036397 GO:0003676
Csa04g02309 780 MobiDBLite consensus disorder prediction 265 279 - -
Csa04g02309 780 SUPERFAMILY Ribonuclease H-like 69 230 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02309 K18327 REXO4, REX4; RNA exonuclease 4 [EC:3.1.-.-] - csv:101210940 1009.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02309 Csa-Chr4:23623371 Csa05g02902 Csa-Chr5:29538179 5.06E-22 dispersed
Csa05g02903 Csa-Chr5:29548532 Csa04g02309 Csa-Chr4:23623371 9.13E-16 dispersed
Csa04g01733 Csa-Chr4:16842382 Csa04g02309 Csa-Chr4:23623371 4.08E-17 transposed
Csa05g00187 Csa-Chr5:1089742 Csa04g02309 Csa-Chr4:23623371 2.41E-07 transposed
Csa06g02173 Csa-Chr6:19568435 Csa04g02309 Csa-Chr4:23623371 1.46E-17 transposed
Csa06g02965 Csa-Chr6:25647762 Csa04g02309 Csa-Chr4:23623371 5.16E-13 transposed
Csa04g00845 Csa-Chr4:5934139 Csa04g02309 Csa-Chr4:23623371 7.75E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g154 . . . . . . Bma10g00486 . Cmo16g00446 Cmo04g00597 . Cma09g00834 . Car09g00749 . Cpe06g00665 . Bhi09g03477 Tan01g0842 . . . Mch11g1034 . Cla11g01729 Cam11g1799 Cec11g1820 Cco11g1826 Clacu11g1958 Cmu11g1768 Cre11g2176 Cone6ag0178 Cone9ag0203 Cone14ag1042 Cone15ag1031 Lsi04g02037 Csa04g02309 Chy07g00045 . Blo07g00959 . Bda05g00779 . . Bpe03g00847 . . . . Cmo09g00829 Cma04g00560 Cma16g00414 Car04g00531 Car16g00379 Cpe14g00348 Cpe01g00505 . . . . . . . Cla07g00940 Cam07g1015 Cec07g1086 Cco07g1064 Clacu07g0985 Cmu07g0981 Cre07g1355 . . Chy07g00954 Cme07g01321
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013823 0 3 0 0 0 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02309 Csa_Chr04 FPKM 5.495238 4.26006 3.416982 5.748388 6.859872 3.983869 4.76713 1.117648 0.0 0.569571