Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02316 ATGGAGATTGAAGCTGTGAACTCTAAAGTGGACACAGCTTCAACTATCACCATCAAAGGCATTCTCAGTCTCCTTGTTCAGAATGCTGATGAGAACAATGGCAGAAGGTTGATTTCCCTTGGTATGGGTGACCCTTCTGCTTATTCTTGTTTTCATACAACCCGTATAGCTCAAGATGCCGTTGTTGATTCTCTTGAATCTGAGAAATTTAATGGCTATGCTCCCACTGCTGGTCTCCCCCAAACTAGAAGGGCGATTGCTGAATATTTATCTCGAGATCTTCCGTATAAGTTGACATCTGACGATGTTTTTATTACGTCTGGATGCACACAAGCGATTGATGTTGCTTTGGCAATGCTTGCTCGTCCTGGTGCAAATATACTGCTTCCAAGGCCTGGTTTCCCAATCTATGAACTTTGTTCTGCATTTCGGAATCTTGAAGTCCGGCACTTTAATCTACTCCCTCAGCAAGGTTGGGAGGTTGATCTTGATGCCATTGAGACCCTTGCCGATAAGAACACCGTTGCATTGGTTATTATCAACCCAGGGAATCCATGTGGAAATGTGTACAGCTATCAGCATCTCAAGAAGATTGCTGAAACTGCAGAAAAACTCGGAATTCTTGTAATTGCTGATGAGGTTTACGGGCATCTTGCTTTTGGAAGTCGACCTTTCGTACCCATGGGAGTCTTTGGATCAACTGTTCCTGTTCTCACCCTTGGATCTCTTTCAAAGAGATGGATAGTACCAGGATGGCGACTTGGGTGGTTTGTGACTAGCGACCCTTCTGGCACGTTCAGAAAACCCAAGGTTATTGAGCGAATCAAGAAGTATTTTGATATATTAGGGGGCCCTGCAACATTCATCCAGGCTGCAGTCCCTCACATACTCGAGTCAACTGATGAGGTTTTCTTCAAGAAAACAATTAACATTTTGAAGCAAACCTCCGAAATATGTTGCAGAAAGATCAAGGAAATCCCTTGCATTACATGCACACACAGACCAGAAGGGTCAATGGCTATGATGGTAAGATTGAACATTGATCTTCTTGAAGATATCAGTGATGATATTGATTTTTGCTTCAAGCTTGCCAAAGAAGAATCACTCGTCATTCTTCCAGGAACGGCGGTAGGGCTGAAGAACTGGCTCCGGATTACTTTTGCGGTCGATCCGTCCTTTCTCGAAGAAGCACTTGGGAGGCTTAAATCCTTTTGTCAAAGGCATACACTAATATTGTAA 1239 43.5 MEIEAVNSKVDTASTITIKGILSLLVQNADENNGRRLISLGMGDPSAYSCFHTTRIAQDAVVDSLESEKFNGYAPTAGLPQTRRAIAEYLSRDLPYKLTSDDVFITSGCTQAIDVALAMLARPGANILLPRPGFPIYELCSAFRNLEVRHFNLLPQQGWEVDLDAIETLADKNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLGILVIADEVYGHLAFGSRPFVPMGVFGSTVPVLTLGSLSKRWIVPGWRLGWFVTSDPSGTFRKPKVIERIKKYFDILGGPATFIQAAVPHILESTDEVFFKKTINILKQTSEICCRKIKEIPCITCTHRPEGSMAMMVRLNIDLLEDISDDIDFCFKLAKEESLVILPGTAVGLKNWLRITFAVDPSFLEEALGRLKSFCQRHTLIL* 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23652836 23655737 - CsaV3_4G033420.1 Csa04g02316 527926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02316 412 PIRSF Tyr_transaminase 2 411 IPR005958 GO:0006520|GO:0008483|GO:0030170
Csa04g02316 412 Gene3D - 56 301 IPR015421 GO:0003824
Csa04g02316 412 CDD AAT_like 38 402 - -
Csa04g02316 412 Gene3D Aspartate Aminotransferase, domain 1 39 405 IPR015422 GO:0003824
Csa04g02316 412 Pfam Aminotransferase class I and II 37 401 IPR004839 GO:0009058|GO:0030170
Csa04g02316 412 PANTHER TYROSINE AMINOTRANSFERASE 7 409 - -
Csa04g02316 412 TIGRFAM tyr_nico_aTase: tyrosine/nicotianamine family aminotransferase 8 408 IPR005958 GO:0006520|GO:0008483|GO:0030170
Csa04g02316 412 PANTHER TYROSINE AMINOTRANSFERASE 7 409 - -
Csa04g02316 412 SUPERFAMILY PLP-dependent transferases 8 407 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02316 K00815 TAT; tyrosine aminotransferase [EC:2.6.1.5] - csv:101212407 817.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02316 Csa-Chr4:23652836 Csa06g01321 Csa-Chr6:11037036 4.55E-167 dispersed
Csa04g02316 Csa-Chr4:23652836 Csa03g02795 Csa-Chr3:26795088 4.27E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g179 . . Bda07g00312 . . . . . . . Cma01g01229 . Car01g01050 Car09g00755 Sed04g2424 Cpe06g00670 Cpe02g00687 Bhi09g03464 Tan01g4364 Cmetu07g0974 . Hepe01g1410 Mch11g1040 . Cla11g01734 Cam11g1804 Cec11g1824 Cco11g1830 Clacu11g1963 Cmu11g1773 Cre11g2180 Cone6ag0170 Cone9ag0196 Cone14ag1052 Cone15ag1044 Lsi04g02044 Csa04g02316 . Cme07g00569 . . . . . . . Bma14g00251 . Cmo01g01282 Cmo09g00835 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000682 2 4 1 1 1 2 3 3 2 2 2 3 4 2 2 5 3 10 3 3 2 6 3 5 4 3 4 4 2 5 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02316 Csa_Chr04 FPKM 3.983629 4.796485 2.370246 2.983498 4.697653 4.024726 4.237061 0.996806 0.855925 0.821202