Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02324 ATGAAGAGAAGTAGGAGAAAGAGTAAAAGTAGTAGGAAATTGAAGTCCAAGAAGCTGCGGTATCGCCACGATTCTCCCTCTTGCTCTGACACTGATTTTGAAAGTTCAACTTCAGTGCCTTCTTCTAGCTCGGAGCATCACAAAAGAGTGAGAAGATCTCGATCCAAGACGCAGAAGAATGCGAAGCCTAGTAAAAAGAGATCCAAAAAGCAATCTCATGATCGTCAAAGTAGGGAATGCTCTCCTAATCCCAGAAAGAGGAAGCATTCAAAGAGAAACGACCGACGTGAGGTGAATAAGGCCAACAAAAAGAAGCGTAGAAGAGATGTGAGTGTTGGTCATAGTAACTCTTTGAGCTGCTCAACTTGTGGAAATGGGAGTACAACCAGCAATGAGAGTGAAGTTGTTAGGCGTAGGGGCAGGTCTGGAAAGAGGAAAGAAAATATGCGAAAGACTGAAAGTGGTAGATACATGTCGAAGAGTCATTCACCATGCTCTTTACGTAGTGAAGGTAGTGATTATCAGAACGAGGTTGATGATGAAAGTTATGTTGAAAACAACTTTAGACGACTAAGATCCATAATTGTTGTAGTAGGGGAGGAAAATAAATTGTATGTTGGGAATGAACAAGAAGGAGTCACAAATCAGCCTAGTGATGACCACCCTTCTTTTGGAGACATGGATAGCAAGGATGCGACGAGTAAAAGAGAATTAGACTATGTTATAACAAAAGAGGCACCAGTAGTAGAAAATGAAAAGGAAGTGGATGTGCCTAACTTTAGGAACTCTATGGTTGTAGAGGACGATGGAGTCCAAAATGAAGGTAGCAACAAAAACCATGGAGGAGTAACTAATGATCGTTCTTCAGATGAGATAAAGAATGGATGTTCTGATAATACTGACAGCATAAATTGTATTGATTTAGAGTCAATGTTACGGCAGAGAGCTTTGGAAAACCTTAGAAAGTTTAAAGGGGCTCCCCCAAGGAATGTGGAAACTATTGCTAATTGCAAAGTTAGCCATAATAATGCTGCTAAGCAATTGTGTTCTCCTATCTCTAAGTCAGTTCATGTGACATCTCCTAGGAATGATGCCGAGATAAATAGCGAACAGTTCTCTAGACAGGGTGGAGGGAATGCAGTAAATTCAATGATAGTTAAGGAGAATGGTGTTAACTCTATGGATGCAATAGATTCAGCAGTTGCAACTATGCATGATCCTGTCTATTCTTCACAGAATCTGGCTTTGAGGCCTAAGCCAAAAGTTGATTCTCTTATAAAGCAGACATCTGCTGCTCAGGAATCTGTCCAAACAAAGCCATCCATATCTGATGTTGCTGTAGGCGAGACTGCTCAAACTCAGACCCAAATGAGGAATAACAACGATCTAAATATTCGTAATGGTTTAGGTTCTTCAGCTCACAAGCCTTCTTCCCTTAATTCTATTTCAGGAGAGAATAGCTTGCATATGTCCAATCACGAGAGTGGAGAAAGCTCACAGTTTGAACAGAAAACCATGTCTGTGATGCGGGGTGGTGAAATGGTGCAGGTGAACTACAAGGTTTACATCCCAAAGAGAGCTCCCGCTTTGACTAGAAGGCAACTCAAGCGGTAA 1614 41.33 MKRSRRKSKSSRKLKSKKLRYRHDSPSCSDTDFESSTSVPSSSSEHHKRVRRSRSKTQKNAKPSKKRSKKQSHDRQSRECSPNPRKRKHSKRNDRREVNKANKKKRRRDVSVGHSNSLSCSTCGNGSTTSNESEVVRRRGRSGKRKENMRKTESGRYMSKSHSPCSLRSEGSDYQNEVDDESYVENNFRRLRSIIVVVGEENKLYVGNEQEGVTNQPSDDHPSFGDMDSKDATSKRELDYVITKEAPVVENEKEVDVPNFRNSMVVEDDGVQNEGSNKNHGGVTNDRSSDEIKNGCSDNTDSINCIDLESMLRQRALENLRKFKGAPPRNVETIANCKVSHNNAAKQLCSPISKSVHVTSPRNDAEINSEQFSRQGGGNAVNSMIVKENGVNSMDAIDSAVATMHDPVYSSQNLALRPKPKVDSLIKQTSAAQESVQTKPSISDVAVGETAQTQTQMRNNNDLNIRNGLGSSAHKPSSLNSISGENSLHMSNHESGESSQFEQKTMSVMRGGEMVQVNYKVYIPKRAPALTRRQLKR* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23711882 23715039 + CsaV3_4G033500.1 Csa04g02324 527934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02324 537 MobiDBLite consensus disorder prediction 208 231 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 84 110 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 113 133 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 270 293 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 1 20 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 47 72 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 208 222 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 468 503 - -
Csa04g02324 537 PANTHER TRANSCRIPTIONAL REGULATOR ATRX-LIKE PROTEIN 2 537 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 158 172 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 1 177 - -
Csa04g02324 537 MobiDBLite consensus disorder prediction 134 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02324 - - - csv:101205593 977.237
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g186 . . . . . . . . . . Cma01g01218 Cma09g00848 Car01g01042 Car09g00761 . Cpe06g00676 Cpe02g00693 Bhi09g03455 . . . Hepe01g1403 . . Cla11g01743 Cam11g1811 Cec11g1831 Cco11g1837 Clacu11g1971 Cmu11g1781 Cre11g2188 Cone6ag0164 . . . Lsi04g02052 Csa04g02324 Chy07g00056 Cme07g00577 . . . . . . . . . Cmo01g01273 Cmo09g00841 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005837 1 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02324 Csa_Chr04 FPKM 14.13265 16.007906 14.670855 15.452169 15.588852 14.296236 14.704142 19.386206 17.400663 16.6395