Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02327 ATGTCTGATGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAACTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACGAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCACCGCTTGATGAAATGTCAATTTCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACACCGAAGGAAAAATCCACAGGGACATTAAAGCGGCAAACATTTTATTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACGATATCAAGGAGAAAGACATTCGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGGGAAAATCCACCTCAGTTGGATGAACATTTTTCGCGGCCAATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAGCGCCCAAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTTCTAGAGCTATAGGTGAAACCACAGACACTGTGAAAGTATCAAGAAATGTGAGGGAGGAAACTGTTCGTGCCAGCAACCAGAATAAAGCTCCAAAGAATGCTGGATGGGACTTCAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGGTGCACCTAGTAGAGTTCCAGAGAGTGGTAACTGGCTAGCTGTGTCTGGATATGCATCACGTGACACATCAGAAAACACCAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGCTATCTGTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGAAAGTGCACAAGGATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCTGGTTCTCCTCAGACTCCAAAATCCAGAATGGGAATTCAAGAAAGGACTTCAAGCTTTTCTCCCGAAGATAGTGCATCAAACCTTGCGGAGGCAAAGGCTGCAATACAAGCAGGATTGAAGAAAGCTAATGCAAGGGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTTGATGCTCCAAGAGCATTGGTAAAACCATCTCTATCACTTGATGAGGAAGAAAGTGCAAAAATAGCATTGTCTTCTGCACCATTATCGGTTTTATTTATGTCATCCTTGAAAGAGGTAGTTGCAGATGATTCGGAAGGATCACCTTCTCGGACTGTAATTAATGCGCTTATAAACATGGAACACCTAAAACCTGGATCATGTGAGGTTCTTGCCACTAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCTACTCGCTTATTCAGTAAAGCAAAGACAGTTCCTGAAGATACACAAAATGTCACAGATTCTGATAATAGCAAAAAGCTACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGTTCGCTTGCTAGATTTTTACTCTCAAGATGGCAAGGTCAGGTGTCACGGGATCTGAGTCCAGCTTAG 2088 42.05 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSISCILRDLLHAIDYLHTEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEEDAETPTNGSRAIGETTDTVKVSRNVREETVRASNQNKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQGAPSRVPESGNWLAVSGYASRDTSENTRDSYSMGDASEDEELSVSGSGTVVIRSPRGSQASTQFHNESSPSESAQGYFEDTSFSGTVVMRGQRDDSGSPQTPKSRMGIQERTSSFSPEDSASNLAEAKAAIQAGLKKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALVKPSLSLDEEESAKIALSSAPLSVLFMSSLKEVVADDSEGSPSRTVINALINMEHLKPGSCEVLATKLLQKLASSKESSLKDLQDLATRLFSKAKTVPEDTQNVTDSDNSKKLPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA* 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23725942 23740497 - CsaV3_4G033530.1 Csa04g02327 527937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02327 695 SUPERFAMILY Protein kinase-like (PK-like) 13 314 IPR011009 -
Csa04g02327 695 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Csa04g02327 695 MobiDBLite consensus disorder prediction 509 528 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 410 489 - -
Csa04g02327 695 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 693 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 384 399 - -
Csa04g02327 695 CDD STKc_MST3_like 14 287 - -
Csa04g02327 695 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02327 695 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02327 695 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 320 491 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 503 539 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 646 669 - -
Csa04g02327 695 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02327 695 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 693 - -
Csa04g02327 695 Coils Coil 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02327 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - csv:101214412 1343.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02327 Csa-Chr4:23725942 Csa05g01193 Csa-Chr5:12373260 8.70E-83 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g02327 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 5.8e-223 770.8
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.1e-67 253.4
Csa04g02327 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.4 1.0e-230 796.6
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.4e-67 254.6
Csa05g01193 . 4 830 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-240 828.9
Csa04g02327 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Csa05g01916 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.8 5.7e-255 877.1
Csa03g00090 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 3.0e-246 848.2
Csa03g00090 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 3.8e-246 847.8
Csa03g02963 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 61.7 2.1e-131 466.5
Csa03g00090 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 1.5e-118 423.7
Csa03g02963 . 1 680 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 6.2e-214 740.7
Csa05g01916 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.6e-102 370.2
Csa03g02963 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 7.3e-87 318.2
Csa03g00090 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.3e-75 278.1
Csa03g01242 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.6e-140 495.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78193 PF00069 Pkinase 5.10E-68 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02327 Csa_Chr04 FPKM 12.599156 12.593908 11.425265 11.561931 6.831734 8.14912 7.627055 10.900538 10.499115 10.936185