Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02327 ATGTCTGATGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAACTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACGAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCACCGCTTGATGAAATGTCAATTTCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACACCGAAGGAAAAATCCACAGGGACATTAAAGCGGCAAACATTTTATTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACGATATCAAGGAGAAAGACATTCGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGGGAAAATCCACCTCAGTTGGATGAACATTTTTCGCGGCCAATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAGCGCCCAAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTTCTAGAGCTATAGGTGAAACCACAGACACTGTGAAAGTATCAAGAAATGTGAGGGAGGAAACTGTTCGTGCCAGCAACCAGAATAAAGCTCCAAAGAATGCTGGATGGGACTTCAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGGTGCACCTAGTAGAGTTCCAGAGAGTGGTAACTGGCTAGCTGTGTCTGGATATGCATCACGTGACACATCAGAAAACACCAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGCTATCTGTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGAAAGTGCACAAGGATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCTGGTTCTCCTCAGACTCCAAAATCCAGAATGGGAATTCAAGAAAGGACTTCAAGCTTTTCTCCCGAAGATAGTGCATCAAACCTTGCGGAGGCAAAGGCTGCAATACAAGCAGGATTGAAGAAAGCTAATGCAAGGGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTTGATGCTCCAAGAGCATTGGTAAAACCATCTCTATCACTTGATGAGGAAGAAAGTGCAAAAATAGCATTGTCTTCTGCACCATTATCGGTTTTATTTATGTCATCCTTGAAAGAGGTAGTTGCAGATGATTCGGAAGGATCACCTTCTCGGACTGTAATTAATGCGCTTATAAACATGGAACACCTAAAACCTGGATCATGTGAGGTTCTTGCCACTAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCTACTCGCTTATTCAGTAAAGCAAAGACAGTTCCTGAAGATACACAAAATGTCACAGATTCTGATAATAGCAAAAAGCTACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGTTCGCTTGCTAGATTTTTACTCTCAAGATGGCAAGGTCAGGTGTCACGGGATCTGAGTCCAGCTTAG 2088 42.05 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSISCILRDLLHAIDYLHTEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEEDAETPTNGSRAIGETTDTVKVSRNVREETVRASNQNKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQGAPSRVPESGNWLAVSGYASRDTSENTRDSYSMGDASEDEELSVSGSGTVVIRSPRGSQASTQFHNESSPSESAQGYFEDTSFSGTVVMRGQRDDSGSPQTPKSRMGIQERTSSFSPEDSASNLAEAKAAIQAGLKKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALVKPSLSLDEEESAKIALSSAPLSVLFMSSLKEVVADDSEGSPSRTVINALINMEHLKPGSCEVLATKLLQKLASSKESSLKDLQDLATRLFSKAKTVPEDTQNVTDSDNSKKLPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA* 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23725942 23740497 - CsaV3_4G033530.1 Csa04g02327 527937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02327 695 SUPERFAMILY Protein kinase-like (PK-like) 13 314 IPR011009 -
Csa04g02327 695 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Csa04g02327 695 MobiDBLite consensus disorder prediction 509 528 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 410 489 - -
Csa04g02327 695 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 693 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 384 399 - -
Csa04g02327 695 CDD STKc_MST3_like 14 287 - -
Csa04g02327 695 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02327 695 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02327 695 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 320 491 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 503 539 - -
Csa04g02327 695 MobiDBLite consensus disorder prediction 646 669 - -
Csa04g02327 695 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02327 695 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 693 - -
Csa04g02327 695 Coils Coil 41 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02327 Csa-Chr4:23725942 Csa05g01193 Csa-Chr5:12373260 8.70E-83 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78193 PF00069 Pkinase 5.10E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02327 K08838 - csv:101214412 1343.95