Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g02331 | ATGACTGGAAAAGAGATTCTTCACAAGATGAAGGAAAAAGTTGGGCTGTGTTCGTCCGATCCAGACTCGGGAAAAGGAAAGAGCAAGATGTCCAAGCATGTCACACATGGCTTTCACCTGGTGGAAGGGAAATCAAATCATGCCATGGAAGATTATTTCGTTGCAGAGTTCAAGCAAGTTGATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGCCATTTGAGCAATTCGATTCCTGATTATTTACGGTCACACTTATTTTCTAATATAATAAATGAGCCCGATTTCTGGACCGACCCAAAGAATGCTGTCAAGAAAGCATACGAGCAAACTGATGCTTACATTTTAGAGAAAGCTGTTGATTTTAGTCATGGAGGTTCAACCGCTGTCACAGCCATATTGATTGACTGTAAGACACTAATAGTGGGCAATGTGGGGGACTCCCGTGCCGTTATCTGTAGTAAAGGGGAGGCCAAACAATTATCGATTGATCATGAGCCGAGCGTTGAAAGAAAAAGCATCGAGGAGAGAGGTGGTTTTGTATCAAACTTCCCTGGAGATGTTCCACGCGTTGATGGGCAGTTGGCGGTCGCAAGGGCGTTTGGTGATAGGAGCTTAAAGCAACATTTGAGTTCAGAGCCTTATGTGGTAGAGGAGACAATAGATGACAATACCGAATTTGTTATCTTAGCAAGCGATGGATTGTGGAAGGTCATGTCAAACGAAGAAGCCGTGGAGTCAATCAAGCATATAAAAGACGCCCATGCAGCTGCCAAACACCTGACAGAGGAAGCCCTCAAGAGGAAGAGCAAAGATGATATCTCTTGTATAGTTGTGAGATTTCACTGA | 852 | 43.66 | MTGKEILHKMKEKVGLCSSDPDSGKGKSKMSKHVTHGFHLVEGKSNHAMEDYFVAEFKQVDHHELGLFAIFDGHLSNSIPDYLRSHLFSNIINEPDFWTDPKNAVKKAYEQTDAYILEKAVDFSHGGSTAVTAILIDCKTLIVGNVGDSRAVICSKGEAKQLSIDHEPSVERKSIEERGGFVSNFPGDVPRVDGQLAVARAFGDRSLKQHLSSEPYVVEETIDDNTEFVILASDGLWKVMSNEEAVESIKHIKDAHAAAKHLTEEALKRKSKDDISCIVVRFH* | 284 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23784845 | 23789167 | + | CsaV3_4G033570.1 | Csa04g02331 | 527941 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g02331 | 283 | CDD | PP2Cc | 43 | 282 | IPR001932 | - | |
| Csa04g02331 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 282 | IPR015655 | GO:0004722|GO:0006470 | |
| Csa04g02331 | 283 | SMART | PP2C_4 | 31 | 280 | IPR001932 | - | |
| Csa04g02331 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 1 | 282 | - | - | |
| Csa04g02331 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 35 | 282 | IPR001932 | - | |
| Csa04g02331 | 283 | Pfam | Protein phosphatase 2C | 47 | 275 | IPR001932 | - | |
| Csa04g02331 | 283 | Gene3D | - | 16 | 283 | IPR036457 | - | |
| Csa04g02331 | 283 | SUPERFAMILY | PP2C-like | 31 | 283 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g00946 | Csa-Chr4:7135600 | Csa04g02331 | Csa-Chr4:23784845 | 2.34E-105 | dispersed | |
| Csa04g02331 | Csa-Chr4:23784845 | Csa07g00485 | Csa-Chr7:3515190 | 7.55E-131 | dispersed | |
| Csa04g02331 | Csa-Chr4:23784845 | Csa03g02203 | Csa-Chr3:19119262 | 4.91E-58 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g02331 | K17506 | - | csv:101215129 | 549.28 |