Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02332 ATGGATGCAAAGAGCTTTGAAGGCAAGCATAATTTCAAAGATAAGACAGTGGTCGATGACGATTTCGAATACGAGACGGAAGAGGAGGAGGTTGGTGGTGGAGGAGGAGGAGGTAGCAACAGCAATGCTTGCAATGCATTGGGTTATTTTGACAATGAGAAAAAGAAAAGAGGGGCAGCAGTTTCTGGCCGTGGAAAGTCTGGTGGAAGCGTCTCTTTGCCGAGTTGCCAAGCGCATAACTGTGCAGCAGATTTGAGTGAAGCAAAGAGGTATCACCGCCGCCATAAGGTCTGCGAGTTTCACTCGAAGGCGGCCATCGTCATGGTTGCTGGAATTCGCCAACGGTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGACGAAGCAAAAAGGAGCTGTCGTCGTAGGCTAGCAGGGCACAACGAACGGCGACGTAAGAGCTCAGCAGAGAGCCAAGGGGAAAGCACAAGCCGCAAAGGATCAGCTCCACAGGCGCAGTCAAAGGAAAGCCATTGCAGGCAGTTGGTGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTCCAGGAAGTTCTGGTTATAAGCACTTGCATATCAGATAA 609 49.59 MDAKSFEGKHNFKDKTVVDDDFEYETEEEEVGGGGGGGSNSNACNALGYFDNEKKKRGAAVSGRGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKGSAPQAQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23787743 23789502 - CsaV3_4G033580.1 Csa04g02332 527942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02332 202 MobiDBLite consensus disorder prediction 156 173 - -
Csa04g02332 202 ProSiteProfiles Zinc finger SBP-type profile. 73 150 IPR004333 GO:0003677
Csa04g02332 202 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 202 IPR044817 GO:0003677
Csa04g02332 202 SUPERFAMILY SBT domain 74 154 IPR036893 GO:0003677|GO:0005634
Csa04g02332 202 MobiDBLite consensus disorder prediction 17 41 - -
Csa04g02332 202 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 11 202 - -
Csa04g02332 202 Pfam SBP domain 76 149 IPR004333 GO:0003677
Csa04g02332 202 Gene3D - 71 137 IPR036893 GO:0003677|GO:0005634
Csa04g02332 202 MobiDBLite consensus disorder prediction 140 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02332 - - - csv:101215375 373.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03589 Csa-Chr3:32029162 Csa04g02332 Csa-Chr4:23787743 3.09E-34 dispersed
Csa04g02332 Csa-Chr4:23787743 Csa04g02750 Csa-Chr4:26359110 1.20E-36 dispersed
Csa01g01244 Csa-Chr1:7740895 Csa04g02332 Csa-Chr4:23787743 4.58E-44 wgd
Csa04g02332 Csa-Chr4:23787743 Csa06g03638 Csa-Chr6:29309069 3.48E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002919 1 2 1 1 2 1 2 2 1 1 2 2 2 1 1 2 1 3 2 2 1 2 2 2 2 2 2 2 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31614 PF03110 SBP 2.20E-31 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02332 Csa_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0