Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02341 ATGGGTGTCGAGGTTGTTGGATTTGAGATGGTGAATGGACCGATGGATTCTGCAGATAATTCTGTTTTGAAAAGCAAGGAAAATGGAGATTTGGATCAATTGCCTGAAAAAAATGCGACCATCAAATTTGGTTCTCATGAAGATGAGCCCGTTAAAGAACAGGCAGATGGTTCTTCAACCACCAATGTCCCCAAAGATGCTGCTGATGAATGGCCTGCACCTAAGCAAATCCATACCTTCTACTTCGTGAGGCATCGGGCTTATGATGATCCGAATGTCAAGGCCAAAATTGATTTGGCTGATAAAGAGATACAGAAGAGGAGTCAAGCTCGGTTTCAAATCACTGAAGCACTTAAGGGAAAGAGGGGGGAACGAGCAGAGTTGATTACTCAGATGAAAGCTCTGAGAGATGACAACAGGCAATTTAAATCAATAGTTGACGAGAAAATTAAAGAGATCGAACCTCTTAACCAAGCTCTTGGCAAGCTCCGTAATGCAAACAATGCAGGTCGAAATGGTGGTTTATGTTCATCTGAGGAAGAGCTTAATGCTGTTATTCAGAGCCTGCAATACCATATACAACATGAAAGCATTCCACTTTCTGAGGAAAAGCAAATTTTAAGAGAAATTAAACAGCTTGAAGGGACGAGGGAGAAAGTTATTGCTAATGCTGCTATGAGAGCAAAGCTTCAGGATTCGATGGTACAGAAAGAAGCCCTCCAAGATCAAGTCAAGATCATAGGTGGCGATTTGGATGGAGTGAGGAAGGAACAACAAGCAGTTAGAGCCAAGATAAAGCAACTCGATGATGCCTTGAAGGCAATAGACAATGAAATTAAAACTTTGCAGGATGAGCTAACTTCTGTTACAGAGAAGAGAGGCAGAGCTCACGAAAGCATTCAGCAACTTAGGAAGAACCGTGATGAGGGGAACGCCCACTTTTATCAGAGCCGATCACTCTTAAACAAAGCCAGAGATCTTGCTGCACAGAAGGACGTCAAGGCCCTTGAGGAGCTTGCTTCTAATGAGGTTGAGAAGTTTATGTCTCTCTGGAATGGTGATAAGGCTTTCAGGGATGAGTATGAAAAAAGAATTCTTCCATCGTTGGATGGTCGGCAGATGAGTAGAGATGGTCGGATAAGGAACCCTGATGAGAAGCCAATACTTGCGCCTGCAGAACCTGCACCTCCTCAAACTGAGATGGCAGCAAAACCTAACATTAAACGAACTAAGGAAGAACCCAAACCAGTGCCATCTGATACTCTTCCTGCACAGAAAGTCGATAAGGAAGTTAAACACAAAGTCGGAAAGTCCGCACGGCCCTTGGAGCAAGAGGATAAAGCAGAGGATGAGATCCATGGTTTAGAAAAATTGTCAAAGGACATCCCTAAAGAACCCGAGGTCGATCTTGCAAAATTGAAGGAAATGAAGAGGGCGGAGGAAATCGCAAAAGCTAAACTAGCCATGGAAAGGAAGAAGAAATTGCAAGAGAAAGCAGCTGCAAAAGCCTCTCTACGAGCTCAGAAGGAAGCAGAAAAGAAATTGAAGGAAATTATTTATATACACACACATATAGACCGTGAAAAGAAAGCAAAGAAGAAGGCAACAACATCTGGATCATTTGCCACACTTCCTGATGAAGAACCTACTGATGCTGATGCAGTTGAAGAGGAATCCACAGAGGTTGAAAAGGTTAATGAAACTGCTGAAGCTCCAGTTCCAGTGAAGACCAAAATCCCAAAGGAGACCGTTGTTAGGAGGCCTGGCAGGCAAAGAGGGCTGGATTCTGTTCCGAAAGTGATTCGGAAGCGCAAGAAGTCGATCAATTACTTGGAATGGGCTGGTCCTGCTGCTGCTGGTGCTGCGGTGTTACTTGTGATCCTTCTGGTTCTTGGATATTACTATTACTACCTTCTCTAA 1920 43.65 MGVEVVGFEMVNGPMDSADNSVLKSKENGDLDQLPEKNATIKFGSHEDEPVKEQADGSSTTNVPKDAADEWPAPKQIHTFYFVRHRAYDDPNVKAKIDLADKEIQKRSQARFQITEALKGKRGERAELITQMKALRDDNRQFKSIVDEKIKEIEPLNQALGKLRNANNAGRNGGLCSSEEELNAVIQSLQYHIQHESIPLSEEKQILREIKQLEGTREKVIANAAMRAKLQDSMVQKEALQDQVKIIGGDLDGVRKEQQAVRAKIKQLDDALKAIDNEIKTLQDELTSVTEKRGRAHESIQQLRKNRDEGNAHFYQSRSLLNKARDLAAQKDVKALEELASNEVEKFMSLWNGDKAFRDEYEKRILPSLDGRQMSRDGRIRNPDEKPILAPAEPAPPQTEMAAKPNIKRTKEEPKPVPSDTLPAQKVDKEVKHKVGKSARPLEQEDKAEDEIHGLEKLSKDIPKEPEVDLAKLKEMKRAEEIAKAKLAMERKKKLQEKAAAKASLRAQKEAEKKLKEIIYIHTHIDREKKAKKKATTSGSFATLPDEEPTDADAVEEESTEVEKVNETAEAPVPVKTKIPKETVVRRPGRQRGLDSVPKVIRKRKKSINYLEWAGPAAAGAAVLLVILLVLGYYYYYLL* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23866189 23869734 - CsaV3_4G033670.1 Csa04g02341 527951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02341 639 MobiDBLite consensus disorder prediction 373 460 - -
Csa04g02341 639 PANTHER PROTON PUMP-INTERACTOR 1-LIKE 15 636 - -
Csa04g02341 639 Coils Coil 118 138 - -
Csa04g02341 639 MobiDBLite consensus disorder prediction 425 460 - -
Csa04g02341 639 Coils Coil 470 512 - -
Csa04g02341 639 MobiDBLite consensus disorder prediction 529 573 - -
Csa04g02341 639 MobiDBLite consensus disorder prediction 14 69 - -
Csa04g02341 639 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 15 636 - -
Csa04g02341 639 Coils Coil 251 292 - -
Csa04g02341 639 Coils Coil 223 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02341 - - - csv:101219165 1118.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02341 Csa-Chr4:23866189 Csa04g02749 Csa-Chr4:26350177 1.89E-38 dispersed
Csa06g00811 Csa-Chr6:6493420 Csa04g02341 Csa-Chr4:23866189 1.60E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g215 . . . . Bpe09g00235 . Bma10g00497 Bma13g00953 . . Cma01g01209 Cma09g00862 Car01g01034 Car09g00775 Sed01g2386 Cpe06g00686 Cpe02g00701 Bhi09g03432 Tan01g4391 Cmetu07g0639 . Hepe01g1388 Mch11g1067 . Cla11g01760 Cam11g1827 Cec11g1847 Cco11g1854 Clacu11g1987 Cmu11g1796 Cre11g2204 Cone6ag0148 Cone9ag0173 . . Lsi04g02071 Csa04g02341 Chy07g00073 . . Blo10g00763 Bda05g00772 Bda12g00839 . Bpe03g00839 . . . Cmo01g01263 Cmo09g00852 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005212 2 1 2 3 2 0 1 1 0 1 1 1 2 0 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02341 Csa_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 1.974367 0.930987 0.877068 0.457475 0.77382