Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02344 ATGTTTGTGTGCTGGCTTATGTGCTGCTTTAAGTGGATAACAATGGAGGGATCATCCGATCACCTTAGGAACCTGGATGATATATCTGGGGTTTGTGAGGAAGATATACTTGCCGACCCTTATCTGCGTTCTCATAAATGGAGTGATATTAGTTTGAGGCAATGGTTGGATAAGCCAGGAAGATCAGTGGATGCTCTTGAATGCCTTCATATATTTAGGCAAATAGTGGAGATTGTTAATATTGCTCATGCTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCATGCTTTGTAATGTCTTCTTTCAACCATGTAACCTTTATTGAGTCGGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCATTAATAGTCAAATGGCAGAGGTTAAAACATCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTTCGATCTGTTATGACCCCTATAAACGCTTTGTCTGAAACTAGTTGCATGCAGTCAAGTTCAATATATGCTGCCCAAGCATCCTTAAATGAAGGGTTTGGGAAATTTAGAAAAAAAGATAGAAGACATATTGAAGAAACAGAAGATAAGGTGCAATCGTTTCCCATGAAACAGATATTGGCCATGGAGACTACATGGTACACCAGCCCAGAAGAGGCTTCGGATAGCCCAAGTTCCAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAATAGAACTATGTCCAGCTTGAGGCATAGAGTGCTTCCTACTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAACCAATCGACCTAAGCTAAGTGAATTATTGCAAAGTGTATTTCTCAATGAACCAAAAGATGATCTAGAAGAACGTGAAGCAGCAATCAAGCTTCGAAAAAAAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTCATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGCTGCAAGATACCATTTCATTTCTATGCAGTGATATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAATATTGGGTCACACACAGATCTTGTGAAGGACAATCATTTGCCATTAAATCTCCCTTCAATGCCTCCTGTCAGGAATACTGATTCTGCTGCTCTGGGATCAAGGAAACGATTTAGACCAGGAATTTTGACCCATGATATAGAAGCATGCGGTGATAATCTTGATCATTGCTCAAAGACAAGTTCAGAGAATGATAACGAACAAGGCGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTTAAGAAATTGGAGTTAGCATACTTTTTGATGAGAGGTAGAGTAAACAAGCCATCAAGGCAGTTTGTTAAACACTCATCAGTAAGTAGTGATGGTAGGGGGTCCGTAGTTTTAACTGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGACAATAGACAAGGTGGGTGGATAAGTCCATTCCTGGAAGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTAAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTGTGTTCTCTCAGTTTTGATCGTGATGGAGAATTTTTTGCCACAGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATTGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCCAGCAGGTCAAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTATGGGATGTCACAAGAAGTCAAGTAGTCACTGAAATGGGAGAACATGAGCGGCGTGTATGGTCCATTGACTTCTCATCAGCAGATCCTACAATTTTGGCAAGTGGGAGTGATGATGGATCAGTTAAGCTCTGGAGTATCAATCAGGGTATAAGTATTGGAACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAATTTCCTGTGGATTCTGGTCGGTCACTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGACATGCGGAATATAAGAGTACCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCAAGCACTCTTGTTTCTGCATCCACGGATAACACTTTGAAGCTCTGGGATTTGTCCATGTCCACATCCCGGGTTGTTGATTCTCCAGTTCAGTCCTTCACAGGCCACATGAATATTAAGAACTTTGTGGGGCTGTCCGTTTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTCGTCTACCACAAAGCCTTTCCAATGCCCGCATTGTCGTACAAGTTTCAAATCGATCCTCTTTCAAGTCATGAAATGGACGACTCCGCACAATTTATCTCTTCGGTTTGTTGGCGAAGTCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2553 40.5 MFVCWLMCCFKWITMEGSSDHLRNLDDISGVCEEDILADPYLRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGINSQMAEVKTSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSIYAAQASLNEGFGKFRKKDRRHIEETEDKVQSFPMKQILAMETTWYTSPEEASDSPSSSASDIYRLGVLLFELFCSFSSREEKNRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSELLQSVFLNEPKDDLEEREAAIKLRKKIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKNIGSHTDLVKDNHLPLNLPSMPPVRNTDSAALGSRKRFRPGILTHDIEACGDNLDHCSKTSSENDNEQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSVSSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMSTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPALSYKFQIDPLSSHEMDDSAQFISSVCWRSQSSSLVAANSTGHIKILEMV* 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23882327 23889214 - CsaV3_4G033700.1 Csa04g02344 527954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02344 850 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 629 666 - -
Csa04g02344 850 Gene3D Transferase(Phosphotransferase) domain 1 48 310 - -
Csa04g02344 850 PRINTS G protein beta WD-40 repeat signature 606 620 IPR020472 -
Csa04g02344 850 PRINTS G protein beta WD-40 repeat signature 649 663 IPR020472 -
Csa04g02344 850 PRINTS G protein beta WD-40 repeat signature 733 747 IPR020472 -
Csa04g02344 850 PANTHER PROTEIN SPA1-RELATED 3 16 850 - -
Csa04g02344 850 SMART serkin_6 22 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02344 850 SMART WD40_4 580 619 IPR001680 GO:0005515
Csa04g02344 850 SMART WD40_4 665 704 IPR001680 GO:0005515
Csa04g02344 850 SMART WD40_4 622 662 IPR001680 GO:0005515
Csa04g02344 850 SMART WD40_4 534 569 IPR001680 GO:0005515
Csa04g02344 850 SMART WD40_4 708 746 IPR001680 GO:0005515
Csa04g02344 850 SMART WD40_4 809 848 IPR001680 GO:0005515
Csa04g02344 850 SMART WD40_4 755 794 IPR001680 GO:0005515
Csa04g02344 850 Pfam WD domain, G-beta repeat 711 746 IPR001680 GO:0005515
Csa04g02344 850 Pfam WD domain, G-beta repeat 627 662 IPR001680 GO:0005515
Csa04g02344 850 SUPERFAMILY Protein kinase-like (PK-like) 24 311 IPR011009 -
Csa04g02344 850 Gene3D - 515 850 IPR015943 GO:0005515
Csa04g02344 850 SUPERFAMILY WD40 repeat-like 538 847 IPR036322 GO:0005515
Csa04g02344 850 ProSitePatterns Trp-Asp (WD) repeats signature. 733 747 IPR019775 -
Csa04g02344 850 ProSiteProfiles Trp-Asp (WD) repeats profile. 715 755 IPR001680 GO:0005515
Csa04g02344 850 Coils Coil 305 325 - -
Csa04g02344 850 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 715 748 - -
Csa04g02344 850 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 671 IPR001680 GO:0005515
Csa04g02344 850 PANTHER PROTEIN SPA1-RELATED 2 16 850 IPR044630 GO:0009640
Csa04g02344 850 ProSiteProfiles Protein kinase domain profile. 1 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02344 - - - csv:101205812 1645.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02344 Csa-Chr4:23882327 Csa05g00216 Csa-Chr5:1292519 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02344 Csa_Chr04 FPKM 9.225331 9.746017 11.580706 10.58046 7.718288 6.793152 7.398998 17.314297 16.382494 18.734486