Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02345 ATGACCGGAGGGTCATTGGGTCTTCGTACGGGAAGCTATGCATCACTGCATCTACAGCTACAAAATGGTGCTTTGCAAAATTCAGCGACGTCACCGCTTGTGCACAAGGCTTCGAAAACAAATCTTTCAAGTACAAGAGAGAGGGAGAGAGTTATTCCCTTGTGTTGTCGATACTTCGGTCGGAGAAGGGTTGCCATGCTCCTCCTGTTTATCCTTGCTCTTTTGGTTTTTGTTTTTGGATCCTTTGCAGTCAGTAGAGATAGCAGTGATTTAAAGGCACCTTATGAAGAAACTACCCTAAGAGATTTGCTAAACCCTGCTGTTCTAAAAACAGAAGAATTCAAGGATATTATAACTTCTACACATGGGAATTTGATTAATCCTCCTTTCCCTTATTCAAATCGTTCTTTAATCTCCTATTCTTTTCCTCGACATTCCCTTCCATCACCACATCCATGCATAAACTTTGCTCTTCCTCCTCCAGCTCCAGCAAACGGAAAGCGGACTGGAGCACGTCCTTGTCCAGTATGTTATATCCCTGTGGAGCAGGCTATTGCTAGTATGCCAATTGCACCATCAATATCTCCTGTACTACGTAATTTAACTTATATTCATGACGGAAACCCAATAAAAACAGAACCACATGGGGGGTCTGATTTCGGTGGATATCCTTCTTTGAGACAGAGGAATGATTCTTTTGATATAAAGGAATCAATGACAGTACACTGTGGATTTGTTAAAGGAAGTAAACCTGGTAATCAGAGTGGTTTCGATATTGATGAAGCCGACCTTTTGGAGTTGGAGGAGTTTCATGAGGTCATTGTTGCATCGGCCATATTTGGAAACTATGATGTATTACAGCAGCCCATTAATATTAGTGAAGAGTCAAAAAAATTTGTTCCTTTCTACATGTTCATTGATGAAGAAACAGAAGCATATATGAAGAATTCCAGCCTCCTAGATAGCAGAAAGAGGATTGGCTTGTGGAGAATCATTGTCGTTCATAATGTTCCTTATGCTGATTCAAGACGTAATGGCAAGATTCCCAAGCTTCTTCTGCATAGGCTTTTCCCAAACATTCAATACTCAATATGGATAGATGGAAAACTTCAGCTTGTTGTGGATCCATTTCAAATTCTTGAGAGATTCTTGTGGCGTCAAAATGCAACTTTTGCAATTTCAAGACACTACAAACGATTTGATGTATTTGAAGAGGCTGATGCTAATAAGGCTGCTGGAAAATATGACAATTCCTCTATTGATGAGCAGATTGGATTTTATGTTACCGAGGGTTTAACACCATATTCCTTGGCTAAGCTTCCTATAACGAGTGATGTTCCTGAAGGATGTGTTCTAATTCGAGAACATATTCCTATAACAAATTTATTTACTTGCCTTTGGTTCAATGAAGTTGATCGTTTTACTTCAAGAGATCAGTTAAGCTTCTCGATGGTGAGAGACAAGATAATGTCTAAAGTCAACTGGAGCCTTAACATGTTTTTGGACTGTGAAAGGCGCAATTTTGTTATACAGACATATCATAGAGAACTACTGGAACACATGCCACCTCCTGCCAGAGAAGTTCTCCATCGTCCTTCACTAGTGCCCGATGTTCATACTGTTTCTAAGCCTTCGGTTCATATTGTTCAAAAGTCTCCACCAGTAAAGAGAAATTCTTCCAAGCGAGGAAGAAGCGATAAGAAGTCCACTTCAAAGCGGCATCGTAAAGTTATTTCTGGGCATAGAGAGGATAATTCGTTATAA 1764 39.97 MTGGSLGLRTGSYASLHLQLQNGALQNSATSPLVHKASKTNLSSTRERERVIPLCCRYFGRRRVAMLLLFILALLVFVFGSFAVSRDSSDLKAPYEETTLRDLLNPAVLKTEEFKDIITSTHGNLINPPFPYSNRSLISYSFPRHSLPSPHPCINFALPPPAPANGKRTGARPCPVCYIPVEQAIASMPIAPSISPVLRNLTYIHDGNPIKTEPHGGSDFGGYPSLRQRNDSFDIKESMTVHCGFVKGSKPGNQSGFDIDEADLLELEEFHEVIVASAIFGNYDVLQQPINISEESKKFVPFYMFIDEETEAYMKNSSLLDSRKRIGLWRIIVVHNVPYADSRRNGKIPKLLLHRLFPNIQYSIWIDGKLQLVVDPFQILERFLWRQNATFAISRHYKRFDVFEEADANKAAGKYDNSSIDEQIGFYVTEGLTPYSLAKLPITSDVPEGCVLIREHIPITNLFTCLWFNEVDRFTSRDQLSFSMVRDKIMSKVNWSLNMFLDCERRNFVIQTYHRELLEHMPPPAREVLHRPSLVPDVHTVSKPSVHIVQKSPPVKRNSSKRGRSDKKSTSKRHRKVISGHREDNSL* 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23896902 23907136 + CsaV3_4G033710.1 Csa04g02345 527955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02345 587 PANTHER ALKALINE CERAMIDASE-RELATED 1 582 IPR006852 -
Csa04g02345 587 MobiDBLite consensus disorder prediction 557 576 - -
Csa04g02345 587 Pfam Protein of unknown function (DUF616) 201 514 IPR006852 -
Csa04g02345 587 PANTHER DUF616 FAMILY PROTEIN 1 582 - -
Csa04g02345 587 MobiDBLite consensus disorder prediction 545 587 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02345 - - - csv:101219639 1179.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00641 Csa-Chr2:4786174 Csa04g02345 Csa-Chr4:23896902 2.18E-78 dispersed
Csa04g02345 Csa-Chr4:23896902 Csa07g01446 Csa-Chr7:14693228 5.40E-84 dispersed
Csa01g01232 Csa-Chr1:7634244 Csa04g02345 Csa-Chr4:23896902 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g870 Blo01g01548 Blo12g00917 . Bda03g00247 . . Bma04g00195 . . . . . Car01g01468 . . . . . . . . . . . . . . . . . . . . . Cone20ag0159 . Csa04g02345 Chy04g00541 . . . . . . . . . . Cmo01g01947 . . . . . . Cpe02g00147 . . . . . . . . . . . . . . . . Chy07g00077 Cme04g00631
Vvi19g223 . . . . . . Bma10g00499 Bma13g00955 . . . Cma09g00866 . Car09g00779 . Cpe06g00689 . Bhi09g03417 . . . . . . Cla11g01763 . Cec11g1850 Cco11g1857 Clacu11g1990 Cmu11g1799 . Cone6ag0145 Cone9ag0170 Cone14ag1064 . Lsi04g01334 Csa04g02345 Chy07g00077 . . . Bda05g00771 . . Bpe03g00837 . . . . Cmo09g00855 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003322 2 11 1 2 2 0 1 1 0 1 1 1 1 1 1 1 0 3 1 1 1 1 1 1 1 0 1 6 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02345 Csa_Chr04 FPKM 11.55064 13.718402 3.688564 4.014582 0.0 0.0 0.351398 0.843861 0.768805 0.777201